Strain Fitness in Dechlorosoma suillum PS around Dsui_2080

Experiment: ALP with Chloride 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2079 and Dsui_2080 overlap by 4 nucleotidesDsui_2080 and Dsui_2081 are separated by 6 nucleotides Dsui_2079: Dsui_2079 - histidine kinase, at 2,198,910 to 2,200,745 _2079 Dsui_2080: Dsui_2080 - response regulator, at 2,200,742 to 2,201,386 _2080 Dsui_2081: Dsui_2081 - transcriptional regulator with HTH domain and aminotransferase domain, at 2,201,393 to 2,202,961 _2081 Position (kb) 2200 2201 2202Strain fitness (log2 ratio) -3 -2 -1 0 1at 2199.755 kb on + strand, within Dsui_2079at 2199.786 kb on + strandat 2199.922 kb on + strand, within Dsui_2079at 2199.955 kb on + strand, within Dsui_2079at 2199.955 kb on + strand, within Dsui_2079at 2199.967 kb on + strand, within Dsui_2079at 2200.072 kb on - strandat 2200.303 kb on + strandat 2200.313 kb on + strand, within Dsui_2079at 2200.495 kb on - strand, within Dsui_2079at 2200.541 kb on + strand, within Dsui_2079at 2200.546 kb on + strandat 2200.554 kb on + strand, within Dsui_2079at 2200.606 kb on + strandat 2200.608 kb on - strandat 2200.681 kb on + strandat 2200.692 kb on + strandat 2200.814 kb on - strandat 2200.827 kb on - strandat 2200.827 kb on - strand, within Dsui_2080at 2200.841 kb on + strand, within Dsui_2080at 2200.971 kb on - strand, within Dsui_2080at 2201.044 kb on + strand, within Dsui_2080at 2201.081 kb on + strand, within Dsui_2080at 2201.109 kb on - strandat 2201.228 kb on + strandat 2201.293 kb on - strand, within Dsui_2080at 2201.687 kb on - strand, within Dsui_2081at 2201.692 kb on - strand, within Dsui_2081at 2201.735 kb on - strand, within Dsui_2081at 2201.806 kb on + strandat 2201.872 kb on + strand, within Dsui_2081at 2201.916 kb on - strandat 2201.997 kb on + strand, within Dsui_2081at 2202.071 kb on + strandat 2202.083 kb on + strandat 2202.083 kb on + strand, within Dsui_2081at 2202.191 kb on - strand, within Dsui_2081at 2202.191 kb on - strand, within Dsui_2081at 2202.223 kb on + strandat 2202.231 kb on - strand, within Dsui_2081at 2202.255 kb on + strand, within Dsui_2081at 2202.290 kb on + strandat 2202.319 kb on - strand, within Dsui_2081at 2202.342 kb on - strand, within Dsui_2081at 2202.354 kb on + strand, within Dsui_2081

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM
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2,199,755 + Dsui_2079 0.46 -0.8
2,199,786 + -0.2
2,199,922 + Dsui_2079 0.55 +0.8
2,199,955 + Dsui_2079 0.57 +0.8
2,199,955 + Dsui_2079 0.57 -0.2
2,199,967 + Dsui_2079 0.58 +0.8
2,200,072 - -0.8
2,200,303 + +0.8
2,200,313 + Dsui_2079 0.76 -0.8
2,200,495 - Dsui_2079 0.86 -1.2
2,200,541 + Dsui_2079 0.89 -1.5
2,200,546 + +0.8
2,200,554 + Dsui_2079 0.90 -0.8
2,200,606 + -1.2
2,200,608 - -1.2
2,200,681 + +0.8
2,200,692 + -0.8
2,200,814 - +0.8
2,200,827 - -1.2
2,200,827 - Dsui_2080 0.13 -1.2
2,200,841 + Dsui_2080 0.15 +0.8
2,200,971 - Dsui_2080 0.36 -1.8
2,201,044 + Dsui_2080 0.47 -1.5
2,201,081 + Dsui_2080 0.53 -0.8
2,201,109 - -1.2
2,201,228 + +0.8
2,201,293 - Dsui_2080 0.85 -0.8
2,201,687 - Dsui_2081 0.19 -1.2
2,201,692 - Dsui_2081 0.19 +0.8
2,201,735 - Dsui_2081 0.22 -3.4
2,201,806 + -0.2
2,201,872 + Dsui_2081 0.31 -0.2
2,201,916 - -0.2
2,201,997 + Dsui_2081 0.38 -0.2
2,202,071 + -1.5
2,202,083 + -0.2
2,202,083 + Dsui_2081 0.44 -0.8
2,202,191 - Dsui_2081 0.51 +0.8
2,202,191 - Dsui_2081 0.51 -1.8
2,202,223 + +0.8
2,202,231 - Dsui_2081 0.53 -1.5
2,202,255 + Dsui_2081 0.55 -0.2
2,202,290 + +0.8
2,202,319 - Dsui_2081 0.59 -0.2
2,202,342 - Dsui_2081 0.60 +0.8
2,202,354 + Dsui_2081 0.61 -0.8

Or see this region's nucleotide sequence