Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1892 and Dsui_1893 are separated by 45 nucleotides Dsui_1893 and Dsui_1894 are separated by 36 nucleotides Dsui_1894 and Dsui_1895 overlap by 4 nucleotides
Dsui_1892: Dsui_1892 - transcriptional regulator, at 1,993,079 to 1,993,966
_1892
Dsui_1893: Dsui_1893 - putative membrane protein, at 1,994,012 to 1,994,383
_1893
Dsui_1894: Dsui_1894 - E3 Ubiquitin ligase, at 1,994,420 to 1,995,325
_1894
Dsui_1895: Dsui_1895 - hypothetical protein, at 1,995,322 to 1,995,894
_1895
Position (kb)
1994
1995 Strain fitness (log2 ratio)
-2
-1
0
1 at 1993.134 kb on - strand at 1993.492 kb on - strand at 1993.497 kb on + strand, within Dsui_1892 at 1993.497 kb on + strand, within Dsui_1892 at 1993.616 kb on + strand, within Dsui_1892 at 1993.617 kb on + strand, within Dsui_1892 at 1993.617 kb on + strand, within Dsui_1892 at 1993.697 kb on + strand, within Dsui_1892 at 1993.705 kb on - strand, within Dsui_1892 at 1993.770 kb on - strand, within Dsui_1892 at 1993.837 kb on + strand, within Dsui_1892 at 1993.879 kb on + strand at 1993.880 kb on - strand at 1993.887 kb on - strand at 1993.887 kb on - strand at 1994.055 kb on + strand, within Dsui_1893 at 1994.289 kb on - strand at 1994.325 kb on + strand, within Dsui_1893 at 1994.345 kb on - strand, within Dsui_1893 at 1994.367 kb on + strand at 1994.441 kb on + strand at 1994.444 kb on - strand at 1994.444 kb on - strand at 1994.444 kb on - strand at 1994.444 kb on - strand at 1994.485 kb on - strand at 1994.593 kb on + strand, within Dsui_1894 at 1994.778 kb on + strand at 1994.867 kb on - strand, within Dsui_1894 at 1994.910 kb on - strand, within Dsui_1894 at 1994.993 kb on + strand, within Dsui_1894 at 1995.188 kb on - strand, within Dsui_1894 at 1995.188 kb on - strand, within Dsui_1894 at 1995.333 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 1,993,134 - -1.4 1,993,492 - +0.6 1,993,497 + Dsui_1892 0.47 -1.4 1,993,497 + Dsui_1892 0.47 +0.1 1,993,616 + Dsui_1892 0.60 +0.9 1,993,617 + Dsui_1892 0.61 -2.5 1,993,617 + Dsui_1892 0.61 -0.4 1,993,697 + Dsui_1892 0.70 -0.2 1,993,705 - Dsui_1892 0.70 -1.4 1,993,770 - Dsui_1892 0.78 -2.7 1,993,837 + Dsui_1892 0.85 -0.4 1,993,879 + -1.5 1,993,880 - -0.3 1,993,887 - +0.7 1,993,887 - +0.7 1,994,055 + Dsui_1893 0.12 -1.7 1,994,289 - +0.7 1,994,325 + Dsui_1893 0.84 -2.3 1,994,345 - Dsui_1893 0.90 -1.3 1,994,367 + -0.9 1,994,441 + -0.9 1,994,444 - -0.3 1,994,444 - -1.3 1,994,444 - -0.3 1,994,444 - +0.7 1,994,485 - -0.3 1,994,593 + Dsui_1894 0.19 -0.3 1,994,778 + +0.7 1,994,867 - Dsui_1894 0.49 -0.9 1,994,910 - Dsui_1894 0.54 -0.3 1,994,993 + Dsui_1894 0.63 -1.3 1,995,188 - Dsui_1894 0.85 -0.9 1,995,188 - Dsui_1894 0.85 +0.7 1,995,333 - -0.5
Or see this region's nucleotide sequence