Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1879 and Dsui_1880 are separated by 206 nucleotides Dsui_1880 and Dsui_1881 are separated by 233 nucleotides Dsui_1881 and Dsui_1882 are separated by 62 nucleotides Dsui_1882 and Dsui_1883 are separated by 103 nucleotides
Dsui_1879: Dsui_1879 - luciferase family oxidoreductase, group 1, at 1,976,525 to 1,977,526
_1879
Dsui_1880: Dsui_1880 - tRNA-Arg, at 1,977,733 to 1,977,807
_1880
Dsui_1881: Dsui_1881 - methyl-accepting chemotaxis protein, at 1,978,041 to 1,980,077
_1881
Dsui_1882: Dsui_1882 - hypothetical protein, at 1,980,140 to 1,980,637
_1882
Dsui_1883: Dsui_1883 - ATPase component of ABC transporters with duplicated ATPase domain, at 1,980,741 to 1,982,663
_1883
Position (kb)
1978
1979
1980
1981 Strain fitness (log2 ratio)
-2
-1
0
1 at 1977.142 kb on - strand at 1977.162 kb on + strand, within Dsui_1879 at 1977.200 kb on + strand, within Dsui_1879 at 1977.262 kb on + strand, within Dsui_1879 at 1977.328 kb on + strand at 1977.329 kb on + strand, within Dsui_1879 at 1977.492 kb on + strand at 1977.519 kb on - strand at 1977.522 kb on + strand at 1977.622 kb on - strand at 1977.862 kb on + strand at 1977.862 kb on + strand at 1977.984 kb on + strand at 1977.989 kb on + strand at 1977.989 kb on + strand at 1977.992 kb on - strand at 1977.997 kb on - strand at 1978.003 kb on + strand at 1978.008 kb on - strand at 1978.064 kb on + strand at 1978.099 kb on + strand at 1978.149 kb on - strand at 1978.177 kb on + strand at 1978.196 kb on + strand at 1978.215 kb on + strand at 1978.247 kb on - strand at 1978.292 kb on - strand at 1978.311 kb on + strand, within Dsui_1881 at 1978.317 kb on + strand, within Dsui_1881 at 1978.365 kb on - strand, within Dsui_1881 at 1978.542 kb on + strand, within Dsui_1881 at 1978.592 kb on - strand, within Dsui_1881 at 1978.608 kb on + strand, within Dsui_1881 at 1978.608 kb on + strand, within Dsui_1881 at 1978.631 kb on + strand, within Dsui_1881 at 1978.692 kb on - strand, within Dsui_1881 at 1978.703 kb on + strand, within Dsui_1881 at 1978.712 kb on + strand, within Dsui_1881 at 1978.720 kb on - strand, within Dsui_1881 at 1978.723 kb on + strand, within Dsui_1881 at 1979.084 kb on + strand, within Dsui_1881 at 1979.090 kb on + strand, within Dsui_1881 at 1979.098 kb on - strand, within Dsui_1881 at 1979.131 kb on - strand at 1979.196 kb on + strand, within Dsui_1881 at 1979.211 kb on - strand, within Dsui_1881 at 1979.211 kb on - strand, within Dsui_1881 at 1979.539 kb on + strand, within Dsui_1881 at 1979.782 kb on + strand, within Dsui_1881 at 1979.790 kb on - strand, within Dsui_1881 at 1979.897 kb on - strand at 1979.911 kb on + strand at 1979.919 kb on - strand at 1979.984 kb on - strand at 1980.000 kb on - strand at 1980.032 kb on - strand at 1980.062 kb on - strand at 1980.174 kb on - strand at 1980.268 kb on + strand, within Dsui_1882 at 1980.302 kb on + strand, within Dsui_1882 at 1980.305 kb on - strand, within Dsui_1882 at 1980.404 kb on - strand, within Dsui_1882 at 1980.585 kb on + strand, within Dsui_1882 at 1980.585 kb on + strand, within Dsui_1882 at 1980.647 kb on - strand at 1980.702 kb on + strand at 1980.883 kb on - strand at 1980.889 kb on - strand at 1980.973 kb on + strand, within Dsui_1883 at 1981.021 kb on + strand, within Dsui_1883 at 1981.021 kb on + strand, within Dsui_1883
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 1,977,142 - -0.3 1,977,162 + Dsui_1879 0.64 -1.6 1,977,200 + Dsui_1879 0.67 -0.9 1,977,262 + Dsui_1879 0.74 -0.9 1,977,328 + -1.3 1,977,329 + Dsui_1879 0.80 -1.6 1,977,492 + -0.3 1,977,519 - +0.7 1,977,522 + +0.7 1,977,622 - +0.7 1,977,862 + +0.7 1,977,862 + -0.9 1,977,984 + +0.0 1,977,989 + +0.3 1,977,989 + +0.1 1,977,992 - -0.3 1,977,997 - -0.3 1,978,003 + +0.1 1,978,008 - +0.7 1,978,064 + +0.3 1,978,099 + +0.8 1,978,149 - +0.7 1,978,177 + +0.3 1,978,196 + +0.7 1,978,215 + +0.4 1,978,247 - -0.3 1,978,292 - -0.3 1,978,311 + Dsui_1881 0.13 +0.4 1,978,317 + Dsui_1881 0.14 +0.3 1,978,365 - Dsui_1881 0.16 -0.3 1,978,542 + Dsui_1881 0.25 +0.4 1,978,592 - Dsui_1881 0.27 +0.7 1,978,608 + Dsui_1881 0.28 +0.5 1,978,608 + Dsui_1881 0.28 +0.3 1,978,631 + Dsui_1881 0.29 -0.2 1,978,692 - Dsui_1881 0.32 +0.7 1,978,703 + Dsui_1881 0.32 +0.5 1,978,712 + Dsui_1881 0.33 -0.0 1,978,720 - Dsui_1881 0.33 +0.7 1,978,723 + Dsui_1881 0.33 +0.4 1,979,084 + Dsui_1881 0.51 +0.3 1,979,090 + Dsui_1881 0.51 +0.2 1,979,098 - Dsui_1881 0.52 -0.9 1,979,131 - +0.7 1,979,196 + Dsui_1881 0.57 -0.9 1,979,211 - Dsui_1881 0.57 -0.3 1,979,211 - Dsui_1881 0.57 +0.7 1,979,539 + Dsui_1881 0.74 +0.3 1,979,782 + Dsui_1881 0.85 +0.0 1,979,790 - Dsui_1881 0.86 -0.3 1,979,897 - -2.3 1,979,911 + +0.2 1,979,919 - -0.3 1,979,984 - -0.3 1,980,000 - -0.3 1,980,032 - +0.7 1,980,062 - +0.7 1,980,174 - -0.9 1,980,268 + Dsui_1882 0.26 +0.7 1,980,302 + Dsui_1882 0.33 -0.9 1,980,305 - Dsui_1882 0.33 +1.0 1,980,404 - Dsui_1882 0.53 -0.5 1,980,585 + Dsui_1882 0.89 -0.9 1,980,585 + Dsui_1882 0.89 -2.1 1,980,647 - -0.2 1,980,702 + +0.7 1,980,883 - -1.3 1,980,889 - +0.7 1,980,973 + Dsui_1883 0.12 -0.3 1,981,021 + Dsui_1883 0.15 -0.1 1,981,021 + Dsui_1883 0.15 +1.3
Or see this region's nucleotide sequence