Strain Fitness in Dechlorosoma suillum PS around Dsui_1881

Experiment: ALP with Chloride 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1879 and Dsui_1880 are separated by 206 nucleotidesDsui_1880 and Dsui_1881 are separated by 233 nucleotidesDsui_1881 and Dsui_1882 are separated by 62 nucleotidesDsui_1882 and Dsui_1883 are separated by 103 nucleotides Dsui_1879: Dsui_1879 - luciferase family oxidoreductase, group 1, at 1,976,525 to 1,977,526 _1879 Dsui_1880: Dsui_1880 - tRNA-Arg, at 1,977,733 to 1,977,807 _1880 Dsui_1881: Dsui_1881 - methyl-accepting chemotaxis protein, at 1,978,041 to 1,980,077 _1881 Dsui_1882: Dsui_1882 - hypothetical protein, at 1,980,140 to 1,980,637 _1882 Dsui_1883: Dsui_1883 - ATPase component of ABC transporters with duplicated ATPase domain, at 1,980,741 to 1,982,663 _1883 Position (kb) 1978 1979 1980 1981Strain fitness (log2 ratio) -2 -1 0 1at 1977.142 kb on - strandat 1977.162 kb on + strand, within Dsui_1879at 1977.200 kb on + strand, within Dsui_1879at 1977.262 kb on + strand, within Dsui_1879at 1977.328 kb on + strandat 1977.329 kb on + strand, within Dsui_1879at 1977.492 kb on + strandat 1977.519 kb on - strandat 1977.522 kb on + strandat 1977.622 kb on - strandat 1977.862 kb on + strandat 1977.862 kb on + strandat 1977.984 kb on + strandat 1977.989 kb on + strandat 1977.989 kb on + strandat 1977.992 kb on - strandat 1977.997 kb on - strandat 1978.003 kb on + strandat 1978.008 kb on - strandat 1978.064 kb on + strandat 1978.099 kb on + strandat 1978.149 kb on - strandat 1978.177 kb on + strandat 1978.196 kb on + strandat 1978.215 kb on + strandat 1978.247 kb on - strandat 1978.292 kb on - strandat 1978.311 kb on + strand, within Dsui_1881at 1978.317 kb on + strand, within Dsui_1881at 1978.365 kb on - strand, within Dsui_1881at 1978.542 kb on + strand, within Dsui_1881at 1978.592 kb on - strand, within Dsui_1881at 1978.608 kb on + strand, within Dsui_1881at 1978.608 kb on + strand, within Dsui_1881at 1978.631 kb on + strand, within Dsui_1881at 1978.692 kb on - strand, within Dsui_1881at 1978.703 kb on + strand, within Dsui_1881at 1978.712 kb on + strand, within Dsui_1881at 1978.720 kb on - strand, within Dsui_1881at 1978.723 kb on + strand, within Dsui_1881at 1979.084 kb on + strand, within Dsui_1881at 1979.090 kb on + strand, within Dsui_1881at 1979.098 kb on - strand, within Dsui_1881at 1979.131 kb on - strandat 1979.196 kb on + strand, within Dsui_1881at 1979.211 kb on - strand, within Dsui_1881at 1979.211 kb on - strand, within Dsui_1881at 1979.539 kb on + strand, within Dsui_1881at 1979.782 kb on + strand, within Dsui_1881at 1979.790 kb on - strand, within Dsui_1881at 1979.897 kb on - strandat 1979.911 kb on + strandat 1979.919 kb on - strandat 1979.984 kb on - strandat 1980.000 kb on - strandat 1980.032 kb on - strandat 1980.062 kb on - strandat 1980.174 kb on - strandat 1980.268 kb on + strand, within Dsui_1882at 1980.302 kb on + strand, within Dsui_1882at 1980.305 kb on - strand, within Dsui_1882at 1980.404 kb on - strand, within Dsui_1882at 1980.585 kb on + strand, within Dsui_1882at 1980.585 kb on + strand, within Dsui_1882at 1980.647 kb on - strandat 1980.702 kb on + strandat 1980.883 kb on - strandat 1980.889 kb on - strandat 1980.973 kb on + strand, within Dsui_1883at 1981.021 kb on + strand, within Dsui_1883at 1981.021 kb on + strand, within Dsui_1883

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM
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1,977,142 - -0.3
1,977,162 + Dsui_1879 0.64 -1.6
1,977,200 + Dsui_1879 0.67 -0.9
1,977,262 + Dsui_1879 0.74 -0.9
1,977,328 + -1.3
1,977,329 + Dsui_1879 0.80 -1.6
1,977,492 + -0.3
1,977,519 - +0.7
1,977,522 + +0.7
1,977,622 - +0.7
1,977,862 + +0.7
1,977,862 + -0.9
1,977,984 + +0.0
1,977,989 + +0.3
1,977,989 + +0.1
1,977,992 - -0.3
1,977,997 - -0.3
1,978,003 + +0.1
1,978,008 - +0.7
1,978,064 + +0.3
1,978,099 + +0.8
1,978,149 - +0.7
1,978,177 + +0.3
1,978,196 + +0.7
1,978,215 + +0.4
1,978,247 - -0.3
1,978,292 - -0.3
1,978,311 + Dsui_1881 0.13 +0.4
1,978,317 + Dsui_1881 0.14 +0.3
1,978,365 - Dsui_1881 0.16 -0.3
1,978,542 + Dsui_1881 0.25 +0.4
1,978,592 - Dsui_1881 0.27 +0.7
1,978,608 + Dsui_1881 0.28 +0.5
1,978,608 + Dsui_1881 0.28 +0.3
1,978,631 + Dsui_1881 0.29 -0.2
1,978,692 - Dsui_1881 0.32 +0.7
1,978,703 + Dsui_1881 0.32 +0.5
1,978,712 + Dsui_1881 0.33 -0.0
1,978,720 - Dsui_1881 0.33 +0.7
1,978,723 + Dsui_1881 0.33 +0.4
1,979,084 + Dsui_1881 0.51 +0.3
1,979,090 + Dsui_1881 0.51 +0.2
1,979,098 - Dsui_1881 0.52 -0.9
1,979,131 - +0.7
1,979,196 + Dsui_1881 0.57 -0.9
1,979,211 - Dsui_1881 0.57 -0.3
1,979,211 - Dsui_1881 0.57 +0.7
1,979,539 + Dsui_1881 0.74 +0.3
1,979,782 + Dsui_1881 0.85 +0.0
1,979,790 - Dsui_1881 0.86 -0.3
1,979,897 - -2.3
1,979,911 + +0.2
1,979,919 - -0.3
1,979,984 - -0.3
1,980,000 - -0.3
1,980,032 - +0.7
1,980,062 - +0.7
1,980,174 - -0.9
1,980,268 + Dsui_1882 0.26 +0.7
1,980,302 + Dsui_1882 0.33 -0.9
1,980,305 - Dsui_1882 0.33 +1.0
1,980,404 - Dsui_1882 0.53 -0.5
1,980,585 + Dsui_1882 0.89 -0.9
1,980,585 + Dsui_1882 0.89 -2.1
1,980,647 - -0.2
1,980,702 + +0.7
1,980,883 - -1.3
1,980,889 - +0.7
1,980,973 + Dsui_1883 0.12 -0.3
1,981,021 + Dsui_1883 0.15 -0.1
1,981,021 + Dsui_1883 0.15 +1.3

Or see this region's nucleotide sequence