Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1823 and Dsui_1824 are separated by 118 nucleotides Dsui_1824 and Dsui_1825 are separated by 455 nucleotides
Dsui_1823: Dsui_1823 - beta-lactamase class D, at 1,920,725 to 1,921,618
_1823
Dsui_1824: Dsui_1824 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,921,737 to 1,923,686
_1824
Dsui_1825: Dsui_1825 - NAD(P)H-dependent nitrite reductase, large subunit, at 1,924,142 to 1,926,580
_1825
Position (kb)
1921
1922
1923
1924 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1920.796 kb on + strand at 1920.917 kb on - strand, within Dsui_1823 at 1920.985 kb on - strand at 1921.043 kb on + strand at 1921.066 kb on + strand at 1921.091 kb on + strand, within Dsui_1823 at 1921.160 kb on + strand, within Dsui_1823 at 1921.203 kb on + strand, within Dsui_1823 at 1921.272 kb on - strand, within Dsui_1823 at 1921.610 kb on + strand at 1921.645 kb on + strand at 1921.673 kb on - strand at 1921.720 kb on - strand at 1921.722 kb on + strand at 1921.813 kb on + strand at 1922.065 kb on - strand at 1922.125 kb on + strand, within Dsui_1824 at 1922.145 kb on - strand, within Dsui_1824 at 1922.223 kb on + strand at 1922.486 kb on + strand, within Dsui_1824 at 1922.524 kb on - strand, within Dsui_1824 at 1922.531 kb on + strand at 1922.539 kb on - strand at 1922.539 kb on - strand, within Dsui_1824 at 1922.539 kb on - strand at 1922.563 kb on - strand at 1922.569 kb on - strand, within Dsui_1824 at 1922.643 kb on + strand at 1922.705 kb on + strand, within Dsui_1824 at 1922.722 kb on + strand, within Dsui_1824 at 1922.735 kb on - strand, within Dsui_1824 at 1922.761 kb on - strand, within Dsui_1824 at 1922.780 kb on - strand, within Dsui_1824 at 1922.810 kb on + strand at 1922.818 kb on - strand, within Dsui_1824 at 1922.823 kb on - strand, within Dsui_1824 at 1922.823 kb on - strand, within Dsui_1824 at 1922.823 kb on - strand at 1922.981 kb on + strand at 1922.989 kb on - strand at 1923.024 kb on + strand at 1923.032 kb on - strand, within Dsui_1824 at 1923.072 kb on + strand at 1923.115 kb on - strand at 1923.142 kb on + strand at 1923.142 kb on + strand at 1923.160 kb on - strand at 1923.272 kb on - strand at 1923.301 kb on - strand, within Dsui_1824 at 1923.375 kb on + strand at 1923.378 kb on - strand, within Dsui_1824 at 1923.543 kb on - strand at 1923.756 kb on + strand at 1923.937 kb on + strand at 1923.964 kb on - strand at 1924.000 kb on - strand at 1924.073 kb on + strand at 1924.194 kb on + strand at 1924.194 kb on + strand at 1924.202 kb on - strand at 1924.217 kb on + strand at 1924.629 kb on + strand, within Dsui_1825 at 1924.648 kb on + strand, within Dsui_1825 at 1924.671 kb on + strand, within Dsui_1825
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 1,920,796 + -1.6 1,920,917 - Dsui_1823 0.21 -2.1 1,920,985 - -1.1 1,921,043 + +0.4 1,921,066 + +0.4 1,921,091 + Dsui_1823 0.41 -1.1 1,921,160 + Dsui_1823 0.49 +0.4 1,921,203 + Dsui_1823 0.53 -0.6 1,921,272 - Dsui_1823 0.61 -0.5 1,921,610 + -1.1 1,921,645 + -1.1 1,921,673 - +0.5 1,921,720 - -0.5 1,921,722 + -0.5 1,921,813 + -0.5 1,922,065 - +0.5 1,922,125 + Dsui_1824 0.20 +0.5 1,922,145 - Dsui_1824 0.21 -0.5 1,922,223 + +0.5 1,922,486 + Dsui_1824 0.38 -1.1 1,922,524 - Dsui_1824 0.40 -2.1 1,922,531 + +0.5 1,922,539 - +0.5 1,922,539 - Dsui_1824 0.41 +0.5 1,922,539 - +0.5 1,922,563 - +0.5 1,922,569 - Dsui_1824 0.43 -0.5 1,922,643 + +0.5 1,922,705 + Dsui_1824 0.50 -1.1 1,922,722 + Dsui_1824 0.51 -1.5 1,922,735 - Dsui_1824 0.51 +0.5 1,922,761 - Dsui_1824 0.53 -0.5 1,922,780 - Dsui_1824 0.53 -1.1 1,922,810 + -1.1 1,922,818 - Dsui_1824 0.55 +0.5 1,922,823 - Dsui_1824 0.56 -1.1 1,922,823 - Dsui_1824 0.56 -2.1 1,922,823 - -0.5 1,922,981 + +0.5 1,922,989 - +0.5 1,923,024 + +0.5 1,923,032 - Dsui_1824 0.66 -0.5 1,923,072 + -1.5 1,923,115 - +0.5 1,923,142 + -0.5 1,923,142 + +0.5 1,923,160 - -1.1 1,923,272 - +0.5 1,923,301 - Dsui_1824 0.80 -0.5 1,923,375 + +0.5 1,923,378 - Dsui_1824 0.84 -2.1 1,923,543 - +0.5 1,923,756 + +0.5 1,923,937 + +0.5 1,923,964 - +0.5 1,924,000 - -0.2 1,924,073 + -0.5 1,924,194 + -1.1 1,924,194 + -0.5 1,924,202 - -0.5 1,924,217 + -0.5 1,924,629 + Dsui_1825 0.20 -2.3 1,924,648 + Dsui_1825 0.21 +0.5 1,924,671 + Dsui_1825 0.22 -3.0
Or see this region's nucleotide sequence