Strain Fitness in Dechlorosoma suillum PS around Dsui_1823

Experiment: ALP with Chloride 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1821 and Dsui_1822 are separated by 130 nucleotidesDsui_1822 and Dsui_1823 are separated by 15 nucleotidesDsui_1823 and Dsui_1824 are separated by 118 nucleotides Dsui_1821: Dsui_1821 - esterase/lipase, at 1,919,326 to 1,920,243 _1821 Dsui_1822: Dsui_1822 - putative membrane protein, at 1,920,374 to 1,920,709 _1822 Dsui_1823: Dsui_1823 - beta-lactamase class D, at 1,920,725 to 1,921,618 _1823 Dsui_1824: Dsui_1824 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,921,737 to 1,923,686 _1824 Position (kb) 1920 1921 1922Strain fitness (log2 ratio) -2 -1 0 1at 1919.742 kb on + strandat 1920.053 kb on - strandat 1920.060 kb on + strandat 1920.060 kb on + strandat 1920.068 kb on - strandat 1920.078 kb on - strand, within Dsui_1821at 1920.135 kb on - strandat 1920.141 kb on + strandat 1920.261 kb on + strandat 1920.274 kb on - strandat 1920.384 kb on + strandat 1920.420 kb on + strand, within Dsui_1822at 1920.443 kb on + strand, within Dsui_1822at 1920.518 kb on - strandat 1920.548 kb on + strand, within Dsui_1822at 1920.553 kb on + strandat 1920.556 kb on - strandat 1920.651 kb on + strand, within Dsui_1822at 1920.651 kb on + strandat 1920.659 kb on - strandat 1920.711 kb on - strandat 1920.796 kb on + strandat 1920.917 kb on - strand, within Dsui_1823at 1920.985 kb on - strandat 1921.043 kb on + strandat 1921.066 kb on + strandat 1921.091 kb on + strand, within Dsui_1823at 1921.160 kb on + strand, within Dsui_1823at 1921.203 kb on + strand, within Dsui_1823at 1921.272 kb on - strand, within Dsui_1823at 1921.610 kb on + strandat 1921.645 kb on + strandat 1921.673 kb on - strandat 1921.720 kb on - strandat 1921.722 kb on + strandat 1921.813 kb on + strandat 1922.065 kb on - strandat 1922.125 kb on + strand, within Dsui_1824at 1922.145 kb on - strand, within Dsui_1824at 1922.223 kb on + strandat 1922.486 kb on + strand, within Dsui_1824at 1922.524 kb on - strand, within Dsui_1824at 1922.531 kb on + strandat 1922.539 kb on - strandat 1922.539 kb on - strand, within Dsui_1824at 1922.539 kb on - strandat 1922.563 kb on - strandat 1922.569 kb on - strand, within Dsui_1824

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM
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1,919,742 + +0.4
1,920,053 - +0.4
1,920,060 + +0.4
1,920,060 + +0.4
1,920,068 - +0.4
1,920,078 - Dsui_1821 0.82 -1.1
1,920,135 - +0.4
1,920,141 + +0.4
1,920,261 + -1.1
1,920,274 - -0.6
1,920,384 + +0.4
1,920,420 + Dsui_1822 0.14 -0.6
1,920,443 + Dsui_1822 0.21 -1.1
1,920,518 - -0.6
1,920,548 + Dsui_1822 0.52 -1.9
1,920,553 + +0.4
1,920,556 - +0.4
1,920,651 + Dsui_1822 0.82 -0.6
1,920,651 + +0.4
1,920,659 - +0.4
1,920,711 - +0.4
1,920,796 + -1.6
1,920,917 - Dsui_1823 0.21 -2.1
1,920,985 - -1.1
1,921,043 + +0.4
1,921,066 + +0.4
1,921,091 + Dsui_1823 0.41 -1.1
1,921,160 + Dsui_1823 0.49 +0.4
1,921,203 + Dsui_1823 0.53 -0.6
1,921,272 - Dsui_1823 0.61 -0.5
1,921,610 + -1.1
1,921,645 + -1.1
1,921,673 - +0.5
1,921,720 - -0.5
1,921,722 + -0.5
1,921,813 + -0.5
1,922,065 - +0.5
1,922,125 + Dsui_1824 0.20 +0.5
1,922,145 - Dsui_1824 0.21 -0.5
1,922,223 + +0.5
1,922,486 + Dsui_1824 0.38 -1.1
1,922,524 - Dsui_1824 0.40 -2.1
1,922,531 + +0.5
1,922,539 - +0.5
1,922,539 - Dsui_1824 0.41 +0.5
1,922,539 - +0.5
1,922,563 - +0.5
1,922,569 - Dsui_1824 0.43 -0.5

Or see this region's nucleotide sequence