Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1796 and Dsui_1797 are separated by 77 nucleotides Dsui_1797 and Dsui_1798 are separated by 29 nucleotides
Dsui_1796: Dsui_1796 - phage/plasmid-related protein TIGR03299, at 1,895,646 to 1,896,614
_1796
Dsui_1797: Dsui_1797 - putative phage-type endonuclease, at 1,896,692 to 1,897,264
_1797
Dsui_1798: Dsui_1798 - DNA replication protein, at 1,897,294 to 1,898,028
_1798
Position (kb)
1897
1898
1899 Strain fitness (log2 ratio)
-2
-1
0
1 at 1896.336 kb on - strand, within Dsui_1796 at 1896.404 kb on + strand, within Dsui_1796 at 1896.422 kb on - strand, within Dsui_1796 at 1896.423 kb on + strand at 1896.484 kb on - strand at 1896.484 kb on - strand, within Dsui_1796 at 1896.587 kb on - strand at 1896.594 kb on + strand at 1896.600 kb on - strand at 1896.657 kb on - strand at 1896.669 kb on + strand at 1896.714 kb on - strand at 1896.722 kb on + strand at 1896.736 kb on - strand at 1896.774 kb on - strand, within Dsui_1797 at 1896.801 kb on + strand at 1896.825 kb on - strand at 1896.834 kb on + strand at 1896.842 kb on - strand, within Dsui_1797 at 1896.898 kb on + strand, within Dsui_1797 at 1896.906 kb on - strand, within Dsui_1797 at 1896.937 kb on + strand at 1896.947 kb on - strand, within Dsui_1797 at 1896.948 kb on + strand, within Dsui_1797 at 1896.983 kb on - strand, within Dsui_1797 at 1897.014 kb on - strand, within Dsui_1797 at 1897.042 kb on + strand at 1897.050 kb on - strand, within Dsui_1797 at 1897.099 kb on - strand, within Dsui_1797 at 1897.136 kb on - strand, within Dsui_1797 at 1897.233 kb on + strand at 1897.241 kb on - strand at 1897.266 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 1,896,336 - Dsui_1796 0.71 -1.2 1,896,404 + Dsui_1796 0.78 +0.4 1,896,422 - Dsui_1796 0.80 +0.4 1,896,423 + +0.4 1,896,484 - +0.4 1,896,484 - Dsui_1796 0.86 +0.4 1,896,587 - +0.4 1,896,594 + +0.4 1,896,600 - +0.4 1,896,657 - -1.6 1,896,669 + +0.4 1,896,714 - -0.6 1,896,722 + -0.6 1,896,736 - +0.4 1,896,774 - Dsui_1797 0.14 +0.4 1,896,801 + +0.4 1,896,825 - -0.6 1,896,834 + +0.4 1,896,842 - Dsui_1797 0.26 -1.9 1,896,898 + Dsui_1797 0.36 +0.4 1,896,906 - Dsui_1797 0.37 -0.6 1,896,937 + +0.4 1,896,947 - Dsui_1797 0.45 -1.6 1,896,948 + Dsui_1797 0.45 -1.2 1,896,983 - Dsui_1797 0.51 -0.6 1,897,014 - Dsui_1797 0.56 +0.4 1,897,042 + +0.4 1,897,050 - Dsui_1797 0.62 +0.4 1,897,099 - Dsui_1797 0.71 -1.9 1,897,136 - Dsui_1797 0.77 +0.4 1,897,233 + -0.6 1,897,241 - +0.4 1,897,266 - +0.4
Or see this region's nucleotide sequence