Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1733 and Dsui_1734 are separated by 19 nucleotides Dsui_1734 and Dsui_1735 are separated by 15 nucleotides Dsui_1735 and Dsui_1736 are separated by 34 nucleotides Dsui_1736 and Dsui_1737 are separated by 25 nucleotides
Dsui_1733: Dsui_1733 - flagellar basal-body rod protein FlgC, at 1,822,394 to 1,822,798
_1733
Dsui_1734: Dsui_1734 - flagellar hook capping protein, at 1,822,818 to 1,823,507
_1734
Dsui_1735: Dsui_1735 - flagellar hook-basal body proteins, at 1,823,523 to 1,824,878
_1735
Dsui_1736: Dsui_1736 - flagellar basal-body rod protein FlgF, at 1,824,913 to 1,825,656
_1736
Dsui_1737: Dsui_1737 - flagellar basal-body rod protein FlgG, at 1,825,682 to 1,826,464
_1737
Position (kb)
1823
1824
1825 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1822.557 kb on + strand, within Dsui_1733 at 1822.602 kb on + strand, within Dsui_1733 at 1822.610 kb on - strand, within Dsui_1733 at 1822.620 kb on - strand at 1822.657 kb on + strand, within Dsui_1733 at 1822.677 kb on + strand, within Dsui_1733 at 1822.677 kb on + strand, within Dsui_1733 at 1822.686 kb on + strand, within Dsui_1733 at 1822.694 kb on - strand at 1822.735 kb on - strand, within Dsui_1733 at 1822.787 kb on - strand at 1822.856 kb on + strand at 1822.857 kb on + strand at 1822.864 kb on + strand at 1822.864 kb on - strand at 1822.937 kb on + strand, within Dsui_1734 at 1823.024 kb on + strand, within Dsui_1734 at 1823.032 kb on - strand, within Dsui_1734 at 1823.032 kb on - strand, within Dsui_1734 at 1823.056 kb on + strand, within Dsui_1734 at 1823.108 kb on + strand, within Dsui_1734 at 1823.212 kb on + strand, within Dsui_1734 at 1823.242 kb on + strand, within Dsui_1734 at 1823.259 kb on + strand, within Dsui_1734 at 1823.261 kb on + strand, within Dsui_1734 at 1823.267 kb on - strand, within Dsui_1734 at 1823.269 kb on - strand at 1823.318 kb on + strand, within Dsui_1734 at 1823.336 kb on - strand, within Dsui_1734 at 1823.348 kb on - strand, within Dsui_1734 at 1823.353 kb on - strand, within Dsui_1734 at 1823.356 kb on + strand, within Dsui_1734 at 1823.364 kb on - strand, within Dsui_1734 at 1823.429 kb on - strand at 1823.443 kb on + strand at 1823.516 kb on - strand at 1823.538 kb on + strand at 1823.549 kb on + strand at 1823.568 kb on + strand at 1823.568 kb on + strand at 1823.600 kb on + strand at 1823.600 kb on + strand at 1823.608 kb on - strand at 1823.608 kb on - strand at 1823.659 kb on + strand, within Dsui_1735 at 1823.727 kb on + strand, within Dsui_1735 at 1823.752 kb on + strand, within Dsui_1735 at 1823.752 kb on + strand, within Dsui_1735 at 1823.757 kb on + strand, within Dsui_1735 at 1823.794 kb on + strand, within Dsui_1735 at 1823.840 kb on - strand, within Dsui_1735 at 1823.885 kb on + strand, within Dsui_1735 at 1824.019 kb on - strand, within Dsui_1735 at 1824.025 kb on - strand, within Dsui_1735 at 1824.053 kb on + strand, within Dsui_1735 at 1824.073 kb on + strand, within Dsui_1735 at 1824.105 kb on + strand, within Dsui_1735 at 1824.131 kb on - strand, within Dsui_1735 at 1824.199 kb on + strand, within Dsui_1735 at 1824.206 kb on + strand, within Dsui_1735 at 1824.219 kb on - strand, within Dsui_1735 at 1824.226 kb on - strand, within Dsui_1735 at 1824.241 kb on + strand, within Dsui_1735 at 1824.268 kb on + strand, within Dsui_1735 at 1824.271 kb on - strand, within Dsui_1735 at 1824.276 kb on - strand, within Dsui_1735 at 1824.276 kb on - strand, within Dsui_1735 at 1824.292 kb on + strand, within Dsui_1735 at 1824.292 kb on + strand, within Dsui_1735 at 1824.300 kb on - strand, within Dsui_1735 at 1824.302 kb on + strand, within Dsui_1735 at 1824.340 kb on - strand, within Dsui_1735 at 1824.389 kb on - strand, within Dsui_1735 at 1824.400 kb on - strand, within Dsui_1735 at 1824.424 kb on - strand, within Dsui_1735 at 1824.474 kb on - strand, within Dsui_1735 at 1824.504 kb on + strand, within Dsui_1735 at 1824.559 kb on + strand, within Dsui_1735 at 1824.562 kb on - strand, within Dsui_1735 at 1824.564 kb on + strand, within Dsui_1735 at 1824.606 kb on - strand, within Dsui_1735 at 1824.606 kb on - strand, within Dsui_1735 at 1824.612 kb on - strand, within Dsui_1735 at 1824.621 kb on + strand, within Dsui_1735 at 1824.647 kb on + strand, within Dsui_1735 at 1824.755 kb on + strand at 1824.765 kb on + strand at 1824.772 kb on + strand at 1824.772 kb on + strand at 1824.780 kb on - strand at 1824.793 kb on + strand at 1824.816 kb on - strand at 1824.821 kb on + strand at 1824.875 kb on - strand at 1824.910 kb on + strand at 1824.924 kb on + strand at 1824.934 kb on + strand at 1824.969 kb on + strand at 1824.969 kb on + strand at 1824.979 kb on + strand at 1824.979 kb on + strand at 1824.979 kb on + strand at 1824.984 kb on + strand at 1825.004 kb on + strand, within Dsui_1736 at 1825.040 kb on - strand at 1825.059 kb on + strand, within Dsui_1736 at 1825.067 kb on - strand, within Dsui_1736 at 1825.076 kb on + strand, within Dsui_1736 at 1825.076 kb on + strand, within Dsui_1736 at 1825.133 kb on - strand, within Dsui_1736 at 1825.142 kb on + strand, within Dsui_1736 at 1825.190 kb on + strand, within Dsui_1736 at 1825.223 kb on + strand, within Dsui_1736 at 1825.231 kb on - strand, within Dsui_1736 at 1825.351 kb on + strand, within Dsui_1736 at 1825.358 kb on + strand, within Dsui_1736 at 1825.358 kb on + strand, within Dsui_1736 at 1825.358 kb on + strand, within Dsui_1736 at 1825.358 kb on + strand, within Dsui_1736 at 1825.358 kb on + strand, within Dsui_1736 at 1825.358 kb on + strand, within Dsui_1736 at 1825.358 kb on + strand, within Dsui_1736 at 1825.358 kb on + strand at 1825.366 kb on - strand, within Dsui_1736 at 1825.366 kb on - strand at 1825.436 kb on + strand, within Dsui_1736 at 1825.511 kb on + strand, within Dsui_1736 at 1825.511 kb on + strand, within Dsui_1736 at 1825.519 kb on - strand, within Dsui_1736 at 1825.617 kb on + strand at 1825.617 kb on + strand at 1825.625 kb on - strand at 1825.708 kb on + strand at 1825.748 kb on + strand at 1825.748 kb on + strand at 1825.801 kb on + strand, within Dsui_1737 at 1825.801 kb on + strand, within Dsui_1737 at 1825.801 kb on + strand, within Dsui_1737 at 1825.848 kb on + strand, within Dsui_1737 at 1825.856 kb on - strand, within Dsui_1737
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 1,822,557 + Dsui_1733 0.40 -0.6 1,822,602 + Dsui_1733 0.51 -2.0 1,822,610 - Dsui_1733 0.53 -3.0 1,822,620 - +0.4 1,822,657 + Dsui_1733 0.65 -0.6 1,822,677 + Dsui_1733 0.70 -0.6 1,822,677 + Dsui_1733 0.70 -0.6 1,822,686 + Dsui_1733 0.72 -1.6 1,822,694 - +0.4 1,822,735 - Dsui_1733 0.84 +0.4 1,822,787 - -2.0 1,822,856 + -2.4 1,822,857 + -1.2 1,822,864 + -3.7 1,822,864 - +0.4 1,822,937 + Dsui_1734 0.17 +0.4 1,823,024 + Dsui_1734 0.30 -1.6 1,823,032 - Dsui_1734 0.31 +0.4 1,823,032 - Dsui_1734 0.31 +0.4 1,823,056 + Dsui_1734 0.34 -1.2 1,823,108 + Dsui_1734 0.42 -1.2 1,823,212 + Dsui_1734 0.57 -0.6 1,823,242 + Dsui_1734 0.61 -2.2 1,823,259 + Dsui_1734 0.64 -1.6 1,823,261 + Dsui_1734 0.64 -0.6 1,823,267 - Dsui_1734 0.65 -1.2 1,823,269 - +0.4 1,823,318 + Dsui_1734 0.72 +0.4 1,823,336 - Dsui_1734 0.75 +0.4 1,823,348 - Dsui_1734 0.77 -0.6 1,823,353 - Dsui_1734 0.78 -2.0 1,823,356 + Dsui_1734 0.78 -0.6 1,823,364 - Dsui_1734 0.79 +0.4 1,823,429 - +0.4 1,823,443 + +0.4 1,823,516 - -0.6 1,823,538 + -1.2 1,823,549 + -1.6 1,823,568 + +0.3 1,823,568 + -1.6 1,823,600 + -1.6 1,823,600 + -2.7 1,823,608 - -1.2 1,823,608 - +0.4 1,823,659 + Dsui_1735 0.10 -1.2 1,823,727 + Dsui_1735 0.15 +0.4 1,823,752 + Dsui_1735 0.17 -1.6 1,823,752 + Dsui_1735 0.17 -0.6 1,823,757 + Dsui_1735 0.17 +0.4 1,823,794 + Dsui_1735 0.20 +0.4 1,823,840 - Dsui_1735 0.23 -1.2 1,823,885 + Dsui_1735 0.27 -1.2 1,824,019 - Dsui_1735 0.37 -2.6 1,824,025 - Dsui_1735 0.37 +0.4 1,824,053 + Dsui_1735 0.39 -0.6 1,824,073 + Dsui_1735 0.41 -1.5 1,824,105 + Dsui_1735 0.43 +1.4 1,824,131 - Dsui_1735 0.45 +0.4 1,824,199 + Dsui_1735 0.50 -1.4 1,824,206 + Dsui_1735 0.50 -2.4 1,824,219 - Dsui_1735 0.51 -0.6 1,824,226 - Dsui_1735 0.52 -1.6 1,824,241 + Dsui_1735 0.53 +0.4 1,824,268 + Dsui_1735 0.55 +0.4 1,824,271 - Dsui_1735 0.55 +0.4 1,824,276 - Dsui_1735 0.56 -1.2 1,824,276 - Dsui_1735 0.56 -0.6 1,824,292 + Dsui_1735 0.57 +0.4 1,824,292 + Dsui_1735 0.57 -1.4 1,824,300 - Dsui_1735 0.57 -3.0 1,824,302 + Dsui_1735 0.57 +0.4 1,824,340 - Dsui_1735 0.60 +0.4 1,824,389 - Dsui_1735 0.64 +0.4 1,824,400 - Dsui_1735 0.65 -0.6 1,824,424 - Dsui_1735 0.66 -1.6 1,824,474 - Dsui_1735 0.70 -0.6 1,824,504 + Dsui_1735 0.72 +0.4 1,824,559 + Dsui_1735 0.76 -0.6 1,824,562 - Dsui_1735 0.77 -0.6 1,824,564 + Dsui_1735 0.77 -0.6 1,824,606 - Dsui_1735 0.80 -0.6 1,824,606 - Dsui_1735 0.80 -0.6 1,824,612 - Dsui_1735 0.80 +0.4 1,824,621 + Dsui_1735 0.81 -0.6 1,824,647 + Dsui_1735 0.83 -0.6 1,824,755 + -1.6 1,824,765 + -0.6 1,824,772 + +0.4 1,824,772 + +0.0 1,824,780 - +0.4 1,824,793 + -1.8 1,824,816 - +0.1 1,824,821 + -0.1 1,824,875 - -1.2 1,824,910 + +0.4 1,824,924 + -1.2 1,824,934 + -2.0 1,824,969 + +0.4 1,824,969 + -0.2 1,824,979 + -1.6 1,824,979 + +0.4 1,824,979 + +0.4 1,824,984 + +0.9 1,825,004 + Dsui_1736 0.12 -0.6 1,825,040 - +0.4 1,825,059 + Dsui_1736 0.20 -1.2 1,825,067 - Dsui_1736 0.21 -0.6 1,825,076 + Dsui_1736 0.22 +1.4 1,825,076 + Dsui_1736 0.22 -0.4 1,825,133 - Dsui_1736 0.30 -0.6 1,825,142 + Dsui_1736 0.31 -0.6 1,825,190 + Dsui_1736 0.37 -0.6 1,825,223 + Dsui_1736 0.42 -0.1 1,825,231 - Dsui_1736 0.43 -2.4 1,825,351 + Dsui_1736 0.59 -0.2 1,825,358 + Dsui_1736 0.60 -0.9 1,825,358 + Dsui_1736 0.60 +0.4 1,825,358 + Dsui_1736 0.60 -0.5 1,825,358 + Dsui_1736 0.60 +0.4 1,825,358 + Dsui_1736 0.60 -2.4 1,825,358 + Dsui_1736 0.60 -0.6 1,825,358 + Dsui_1736 0.60 +1.4 1,825,358 + +0.4 1,825,366 - Dsui_1736 0.61 -0.6 1,825,366 - +0.4 1,825,436 + Dsui_1736 0.70 -2.0 1,825,511 + Dsui_1736 0.80 +0.4 1,825,511 + Dsui_1736 0.80 -1.2 1,825,519 - Dsui_1736 0.81 +0.4 1,825,617 + -1.2 1,825,617 + -2.0 1,825,625 - +0.4 1,825,708 + -2.5 1,825,748 + -2.0 1,825,748 + -3.0 1,825,801 + Dsui_1737 0.15 -1.5 1,825,801 + Dsui_1737 0.15 -0.6 1,825,801 + Dsui_1737 0.15 -2.0 1,825,848 + Dsui_1737 0.21 -1.7 1,825,856 - Dsui_1737 0.22 +0.4
Or see this region's nucleotide sequence