Strain Fitness in Dechlorosoma suillum PS around Dsui_1702

Experiment: ALP with Chloride 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1700 and Dsui_1701 are separated by 82 nucleotidesDsui_1701 and Dsui_1702 are separated by 204 nucleotidesDsui_1702 and Dsui_1703 are separated by 14 nucleotidesDsui_1703 and Dsui_1704 are separated by 275 nucleotides Dsui_1700: Dsui_1700 - putative membrane protein, at 1,787,684 to 1,788,394 _1700 Dsui_1701: Dsui_1701 - restriction endonuclease, at 1,788,477 to 1,789,109 _1701 Dsui_1702: Dsui_1702 - TonB family protein, at 1,789,314 to 1,790,039 _1702 Dsui_1703: Dsui_1703 - ADP-ribose pyrophosphatase, at 1,790,054 to 1,790,602 _1703 Dsui_1704: Dsui_1704 - flagellar motor stator protein MotA, at 1,790,878 to 1,791,735 _1704 Position (kb) 1789 1790 1791Strain fitness (log2 ratio) -3 -2 -1 0 1at 1788.348 kb on - strandat 1788.372 kb on - strandat 1788.382 kb on - strandat 1788.449 kb on + strandat 1788.482 kb on - strandat 1788.539 kb on - strandat 1788.540 kb on - strandat 1788.544 kb on - strand, within Dsui_1701at 1788.599 kb on + strand, within Dsui_1701at 1788.602 kb on - strand, within Dsui_1701at 1788.717 kb on - strand, within Dsui_1701at 1788.816 kb on + strand, within Dsui_1701at 1788.828 kb on + strandat 1788.914 kb on + strand, within Dsui_1701at 1788.935 kb on + strand, within Dsui_1701at 1789.026 kb on + strand, within Dsui_1701at 1789.034 kb on - strand, within Dsui_1701at 1789.034 kb on - strand, within Dsui_1701at 1789.034 kb on - strand, within Dsui_1701at 1789.210 kb on + strandat 1789.310 kb on + strandat 1789.366 kb on + strandat 1789.385 kb on - strandat 1789.488 kb on + strandat 1789.714 kb on - strand, within Dsui_1702at 1789.747 kb on + strand, within Dsui_1702at 1789.834 kb on + strand, within Dsui_1702at 1789.885 kb on - strand, within Dsui_1702at 1789.973 kb on + strandat 1790.028 kb on - strandat 1790.083 kb on + strandat 1790.083 kb on + strandat 1790.083 kb on + strandat 1790.091 kb on - strandat 1790.091 kb on - strandat 1790.091 kb on - strandat 1790.093 kb on + strandat 1790.102 kb on + strandat 1790.106 kb on - strandat 1790.175 kb on - strand, within Dsui_1703at 1790.221 kb on + strand, within Dsui_1703at 1790.264 kb on + strand, within Dsui_1703at 1790.282 kb on - strand, within Dsui_1703at 1790.283 kb on - strand, within Dsui_1703at 1790.341 kb on - strand, within Dsui_1703at 1790.346 kb on - strand, within Dsui_1703at 1790.433 kb on - strand, within Dsui_1703at 1790.449 kb on - strand, within Dsui_1703at 1790.493 kb on + strand, within Dsui_1703at 1790.507 kb on - strand, within Dsui_1703at 1790.592 kb on + strandat 1790.595 kb on - strandat 1790.610 kb on + strandat 1790.610 kb on + strandat 1790.613 kb on + strandat 1790.616 kb on - strandat 1790.618 kb on - strandat 1790.679 kb on - strandat 1790.683 kb on + strandat 1790.685 kb on + strandat 1790.692 kb on - strandat 1790.778 kb on - strandat 1790.801 kb on + strandat 1790.854 kb on + strandat 1790.861 kb on + strandat 1790.863 kb on + strandat 1791.023 kb on + strand, within Dsui_1704

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM
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1,788,348 - +1.3
1,788,372 - +0.3
1,788,382 - -0.3
1,788,449 + +0.3
1,788,482 - +0.3
1,788,539 - +0.3
1,788,540 - -1.7
1,788,544 - Dsui_1701 0.11 -1.7
1,788,599 + Dsui_1701 0.19 -0.7
1,788,602 - Dsui_1701 0.20 -0.7
1,788,717 - Dsui_1701 0.38 +0.3
1,788,816 + Dsui_1701 0.54 -3.3
1,788,828 + +0.3
1,788,914 + Dsui_1701 0.69 -1.0
1,788,935 + Dsui_1701 0.72 -2.7
1,789,026 + Dsui_1701 0.87 -1.3
1,789,034 - Dsui_1701 0.88 +1.3
1,789,034 - Dsui_1701 0.88 -1.3
1,789,034 - Dsui_1701 0.88 +0.3
1,789,210 + +0.3
1,789,310 + +1.3
1,789,366 + +0.3
1,789,385 - +0.3
1,789,488 + +0.3
1,789,714 - Dsui_1702 0.55 -2.9
1,789,747 + Dsui_1702 0.60 +0.3
1,789,834 + Dsui_1702 0.72 +0.3
1,789,885 - Dsui_1702 0.79 +0.3
1,789,973 + +0.3
1,790,028 - +0.0
1,790,083 + -0.7
1,790,083 + -0.7
1,790,083 + +0.3
1,790,091 - -0.0
1,790,091 - +0.2
1,790,091 - +0.7
1,790,093 + -2.0
1,790,102 + -1.7
1,790,106 - +0.2
1,790,175 - Dsui_1703 0.22 +0.0
1,790,221 + Dsui_1703 0.30 -2.7
1,790,264 + Dsui_1703 0.38 +0.3
1,790,282 - Dsui_1703 0.42 -0.1
1,790,283 - Dsui_1703 0.42 +0.6
1,790,341 - Dsui_1703 0.52 +0.2
1,790,346 - Dsui_1703 0.53 +0.6
1,790,433 - Dsui_1703 0.69 +0.4
1,790,449 - Dsui_1703 0.72 +0.2
1,790,493 + Dsui_1703 0.80 -2.0
1,790,507 - Dsui_1703 0.83 +0.0
1,790,592 + +0.3
1,790,595 - +0.1
1,790,610 + -2.5
1,790,610 + +0.3
1,790,613 + -0.7
1,790,616 - -0.3
1,790,618 - +0.0
1,790,679 - -0.7
1,790,683 + +0.3
1,790,685 + -1.7
1,790,692 - -0.7
1,790,778 - -0.7
1,790,801 + +0.5
1,790,854 + +0.0
1,790,861 + +0.1
1,790,863 + +0.1
1,791,023 + Dsui_1704 0.17 +0.1

Or see this region's nucleotide sequence