Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1699 and Dsui_1700 are separated by 12 nucleotides Dsui_1700 and Dsui_1701 are separated by 82 nucleotides Dsui_1701 and Dsui_1702 are separated by 204 nucleotides Dsui_1702 and Dsui_1703 are separated by 14 nucleotides
Dsui_1699: Dsui_1699 - cation/cationic drug transporter, at 1,787,315 to 1,787,671
_1699
Dsui_1700: Dsui_1700 - putative membrane protein, at 1,787,684 to 1,788,394
_1700
Dsui_1701: Dsui_1701 - restriction endonuclease, at 1,788,477 to 1,789,109
_1701
Dsui_1702: Dsui_1702 - TonB family protein, at 1,789,314 to 1,790,039
_1702
Dsui_1703: Dsui_1703 - ADP-ribose pyrophosphatase, at 1,790,054 to 1,790,602
_1703
Position (kb)
1788
1789
1790 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1787.522 kb on + strand, within Dsui_1699 at 1787.522 kb on + strand, within Dsui_1699 at 1787.530 kb on - strand, within Dsui_1699 at 1787.530 kb on - strand, within Dsui_1699 at 1787.530 kb on - strand, within Dsui_1699 at 1787.535 kb on - strand, within Dsui_1699 at 1787.554 kb on - strand, within Dsui_1699 at 1787.622 kb on + strand, within Dsui_1699 at 1787.636 kb on - strand at 1787.652 kb on + strand at 1787.775 kb on + strand, within Dsui_1700 at 1787.793 kb on + strand, within Dsui_1700 at 1787.799 kb on + strand, within Dsui_1700 at 1788.077 kb on - strand, within Dsui_1700 at 1788.096 kb on + strand, within Dsui_1700 at 1788.109 kb on - strand, within Dsui_1700 at 1788.165 kb on + strand, within Dsui_1700 at 1788.171 kb on + strand at 1788.173 kb on - strand, within Dsui_1700 at 1788.179 kb on - strand, within Dsui_1700 at 1788.249 kb on + strand at 1788.257 kb on - strand, within Dsui_1700 at 1788.348 kb on - strand at 1788.372 kb on - strand at 1788.382 kb on - strand at 1788.449 kb on + strand at 1788.482 kb on - strand at 1788.539 kb on - strand at 1788.540 kb on - strand at 1788.544 kb on - strand, within Dsui_1701 at 1788.599 kb on + strand, within Dsui_1701 at 1788.602 kb on - strand, within Dsui_1701 at 1788.717 kb on - strand, within Dsui_1701 at 1788.816 kb on + strand, within Dsui_1701 at 1788.828 kb on + strand at 1788.914 kb on + strand, within Dsui_1701 at 1788.935 kb on + strand, within Dsui_1701 at 1789.026 kb on + strand, within Dsui_1701 at 1789.034 kb on - strand, within Dsui_1701 at 1789.034 kb on - strand, within Dsui_1701 at 1789.034 kb on - strand, within Dsui_1701 at 1789.210 kb on + strand at 1789.310 kb on + strand at 1789.366 kb on + strand at 1789.385 kb on - strand at 1789.488 kb on + strand at 1789.714 kb on - strand, within Dsui_1702 at 1789.747 kb on + strand, within Dsui_1702 at 1789.834 kb on + strand, within Dsui_1702 at 1789.885 kb on - strand, within Dsui_1702 at 1789.973 kb on + strand at 1790.028 kb on - strand at 1790.083 kb on + strand at 1790.083 kb on + strand at 1790.083 kb on + strand at 1790.091 kb on - strand at 1790.091 kb on - strand at 1790.091 kb on - strand at 1790.093 kb on + strand at 1790.102 kb on + strand at 1790.106 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 1,787,522 + Dsui_1699 0.58 +0.0 1,787,522 + Dsui_1699 0.58 -0.7 1,787,530 - Dsui_1699 0.60 -1.1 1,787,530 - Dsui_1699 0.60 -0.4 1,787,530 - Dsui_1699 0.60 +0.3 1,787,535 - Dsui_1699 0.62 -0.7 1,787,554 - Dsui_1699 0.67 -1.7 1,787,622 + Dsui_1699 0.86 -0.7 1,787,636 - -1.7 1,787,652 + -0.7 1,787,775 + Dsui_1700 0.13 -0.7 1,787,793 + Dsui_1700 0.15 +0.3 1,787,799 + Dsui_1700 0.16 -0.7 1,788,077 - Dsui_1700 0.55 -0.5 1,788,096 + Dsui_1700 0.58 -0.7 1,788,109 - Dsui_1700 0.60 -0.2 1,788,165 + Dsui_1700 0.68 -0.7 1,788,171 + +0.3 1,788,173 - Dsui_1700 0.69 -1.1 1,788,179 - Dsui_1700 0.70 -0.8 1,788,249 + +0.3 1,788,257 - Dsui_1700 0.81 +0.3 1,788,348 - +1.3 1,788,372 - +0.3 1,788,382 - -0.3 1,788,449 + +0.3 1,788,482 - +0.3 1,788,539 - +0.3 1,788,540 - -1.7 1,788,544 - Dsui_1701 0.11 -1.7 1,788,599 + Dsui_1701 0.19 -0.7 1,788,602 - Dsui_1701 0.20 -0.7 1,788,717 - Dsui_1701 0.38 +0.3 1,788,816 + Dsui_1701 0.54 -3.3 1,788,828 + +0.3 1,788,914 + Dsui_1701 0.69 -1.0 1,788,935 + Dsui_1701 0.72 -2.7 1,789,026 + Dsui_1701 0.87 -1.3 1,789,034 - Dsui_1701 0.88 +1.3 1,789,034 - Dsui_1701 0.88 -1.3 1,789,034 - Dsui_1701 0.88 +0.3 1,789,210 + +0.3 1,789,310 + +1.3 1,789,366 + +0.3 1,789,385 - +0.3 1,789,488 + +0.3 1,789,714 - Dsui_1702 0.55 -2.9 1,789,747 + Dsui_1702 0.60 +0.3 1,789,834 + Dsui_1702 0.72 +0.3 1,789,885 - Dsui_1702 0.79 +0.3 1,789,973 + +0.3 1,790,028 - +0.0 1,790,083 + -0.7 1,790,083 + -0.7 1,790,083 + +0.3 1,790,091 - -0.0 1,790,091 - +0.2 1,790,091 - +0.7 1,790,093 + -2.0 1,790,102 + -1.7 1,790,106 - +0.2
Or see this region's nucleotide sequence