Strain Fitness in Dechlorosoma suillum PS around Dsui_1551

Experiment: ALP with Chloride 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1550 and Dsui_1551 are separated by 156 nucleotidesDsui_1551 and Dsui_1552 are separated by 67 nucleotides Dsui_1550: Dsui_1550 - diguanylate cyclase (GGDEF) domain-containing protein, at 1,611,513 to 1,613,231 _1550 Dsui_1551: Dsui_1551 - DNA mismatch repair protein MutL, at 1,613,388 to 1,615,244 _1551 Dsui_1552: Dsui_1552 - tRNA isopentenyltransferase MiaA, at 1,615,312 to 1,616,259 _1552 Position (kb) 1613 1614 1615 1616Strain fitness (log2 ratio) -2 -1 0 1at 1612.456 kb on - strand, within Dsui_1550at 1612.457 kb on - strand, within Dsui_1550at 1612.550 kb on - strand, within Dsui_1550at 1612.569 kb on - strand, within Dsui_1550at 1612.574 kb on - strand, within Dsui_1550at 1612.817 kb on - strand, within Dsui_1550at 1613.057 kb on + strandat 1613.197 kb on + strandat 1613.210 kb on - strandat 1613.235 kb on - strandat 1613.293 kb on - strandat 1613.465 kb on + strandat 1613.632 kb on + strand, within Dsui_1551at 1613.972 kb on - strandat 1614.004 kb on + strand, within Dsui_1551at 1614.101 kb on + strand, within Dsui_1551at 1614.341 kb on + strand, within Dsui_1551at 1614.353 kb on + strand, within Dsui_1551at 1614.361 kb on - strand, within Dsui_1551at 1614.405 kb on - strandat 1614.517 kb on + strand, within Dsui_1551at 1614.743 kb on + strand, within Dsui_1551at 1614.797 kb on - strand, within Dsui_1551at 1614.968 kb on - strand, within Dsui_1551at 1614.978 kb on + strand, within Dsui_1551at 1614.987 kb on - strand, within Dsui_1551at 1615.019 kb on + strand, within Dsui_1551at 1615.059 kb on + strandat 1615.202 kb on + strandat 1615.262 kb on + strandat 1615.601 kb on + strand, within Dsui_1552

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM
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1,612,456 - Dsui_1550 0.55 -1.3
1,612,457 - Dsui_1550 0.55 -0.1
1,612,550 - Dsui_1550 0.60 -0.7
1,612,569 - Dsui_1550 0.61 +0.3
1,612,574 - Dsui_1550 0.62 -2.0
1,612,817 - Dsui_1550 0.76 -0.9
1,613,057 + +0.3
1,613,197 + -1.7
1,613,210 - -1.6
1,613,235 - -0.3
1,613,293 - +0.3
1,613,465 + -0.2
1,613,632 + Dsui_1551 0.13 +0.8
1,613,972 - +0.3
1,614,004 + Dsui_1551 0.33 +0.3
1,614,101 + Dsui_1551 0.38 -0.1
1,614,341 + Dsui_1551 0.51 +0.1
1,614,353 + Dsui_1551 0.52 +0.8
1,614,361 - Dsui_1551 0.52 -2.3
1,614,405 - +0.3
1,614,517 + Dsui_1551 0.61 -0.4
1,614,743 + Dsui_1551 0.73 -0.1
1,614,797 - Dsui_1551 0.76 -2.3
1,614,968 - Dsui_1551 0.85 -0.7
1,614,978 + Dsui_1551 0.86 -0.8
1,614,987 - Dsui_1551 0.86 -0.7
1,615,019 + Dsui_1551 0.88 -0.9
1,615,059 + -0.4
1,615,202 + -1.0
1,615,262 + -0.1
1,615,601 + Dsui_1552 0.30 +0.3

Or see this region's nucleotide sequence