Strain Fitness in Dechlorosoma suillum PS around Dsui_1473

Experiment: ALP with Chloride 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1471 and Dsui_1472 are separated by 4 nucleotidesDsui_1472 and Dsui_1473 are separated by 118 nucleotidesDsui_1473 and Dsui_1475 are separated by 461 nucleotides Dsui_1471: Dsui_1471 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 1,534,166 to 1,534,978 _1471 Dsui_1472: Dsui_1472 - deoxynucleoside kinase, at 1,534,983 to 1,535,657 _1472 Dsui_1473: Dsui_1473 - methyl-accepting chemotaxis protein, at 1,535,776 to 1,536,906 _1473 Dsui_1475: Dsui_1475 - hypothetical protein, at 1,537,368 to 1,538,777 _1475 Position (kb) 1535 1536 1537Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1535.159 kb on + strand, within Dsui_1472at 1535.279 kb on + strand, within Dsui_1472at 1535.303 kb on + strand, within Dsui_1472at 1535.389 kb on - strand, within Dsui_1472at 1535.466 kb on + strand, within Dsui_1472at 1535.536 kb on - strand, within Dsui_1472at 1535.781 kb on + strandat 1535.789 kb on - strandat 1535.828 kb on - strandat 1535.946 kb on + strand, within Dsui_1473at 1535.988 kb on + strand, within Dsui_1473at 1535.993 kb on - strandat 1535.998 kb on + strand, within Dsui_1473at 1536.004 kb on + strand, within Dsui_1473at 1536.102 kb on + strand, within Dsui_1473at 1536.102 kb on + strand, within Dsui_1473at 1536.102 kb on - strand, within Dsui_1473at 1536.102 kb on - strand, within Dsui_1473at 1536.110 kb on - strand, within Dsui_1473at 1536.110 kb on - strand, within Dsui_1473at 1536.136 kb on - strand, within Dsui_1473at 1536.159 kb on - strand, within Dsui_1473at 1536.250 kb on + strand, within Dsui_1473at 1536.273 kb on + strand, within Dsui_1473at 1536.311 kb on + strand, within Dsui_1473at 1536.480 kb on + strand, within Dsui_1473at 1536.488 kb on - strand, within Dsui_1473at 1536.531 kb on + strand, within Dsui_1473at 1536.531 kb on + strand, within Dsui_1473at 1536.598 kb on - strand, within Dsui_1473at 1536.625 kb on + strand, within Dsui_1473at 1536.694 kb on - strand, within Dsui_1473at 1536.696 kb on + strand, within Dsui_1473at 1536.711 kb on + strand, within Dsui_1473at 1536.719 kb on - strand, within Dsui_1473at 1536.774 kb on + strand, within Dsui_1473at 1536.909 kb on + strandat 1536.990 kb on + strandat 1536.998 kb on - strandat 1537.032 kb on + strandat 1537.042 kb on + strandat 1537.042 kb on + strandat 1537.051 kb on - strandat 1537.068 kb on + strandat 1537.113 kb on - strandat 1537.122 kb on - strandat 1537.128 kb on - strandat 1537.156 kb on + strandat 1537.173 kb on - strandat 1537.221 kb on + strandat 1537.237 kb on - strandat 1537.245 kb on + strandat 1537.250 kb on + strandat 1537.253 kb on - strandat 1537.253 kb on - strandat 1537.309 kb on - strandat 1537.357 kb on + strandat 1537.370 kb on + strandat 1537.380 kb on - strandat 1537.413 kb on - strandat 1537.413 kb on - strandat 1537.413 kb on - strandat 1537.413 kb on - strandat 1537.467 kb on + strandat 1537.467 kb on + strandat 1537.473 kb on + strandat 1537.475 kb on - strandat 1537.475 kb on - strandat 1537.482 kb on - strandat 1537.500 kb on + strandat 1537.532 kb on + strand, within Dsui_1475at 1537.551 kb on + strand, within Dsui_1475at 1537.603 kb on + strand, within Dsui_1475at 1537.620 kb on + strand, within Dsui_1475at 1537.628 kb on - strand, within Dsui_1475at 1537.628 kb on - strand, within Dsui_1475at 1537.633 kb on - strand, within Dsui_1475at 1537.672 kb on + strand, within Dsui_1475at 1537.706 kb on + strand, within Dsui_1475at 1537.715 kb on + strand, within Dsui_1475at 1537.755 kb on + strand, within Dsui_1475at 1537.802 kb on + strand, within Dsui_1475at 1537.802 kb on + strand, within Dsui_1475at 1537.803 kb on + strand, within Dsui_1475at 1537.870 kb on + strand, within Dsui_1475

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM
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1,535,159 + Dsui_1472 0.26 -1.0
1,535,279 + Dsui_1472 0.44 -0.7
1,535,303 + Dsui_1472 0.47 -2.7
1,535,389 - Dsui_1472 0.60 -0.2
1,535,466 + Dsui_1472 0.72 +0.3
1,535,536 - Dsui_1472 0.82 +0.2
1,535,781 + -1.3
1,535,789 - +0.3
1,535,828 - +0.3
1,535,946 + Dsui_1473 0.15 -0.7
1,535,988 + Dsui_1473 0.19 +0.3
1,535,993 - +0.3
1,535,998 + Dsui_1473 0.20 +0.3
1,536,004 + Dsui_1473 0.20 -1.7
1,536,102 + Dsui_1473 0.29 +0.3
1,536,102 + Dsui_1473 0.29 -0.7
1,536,102 - Dsui_1473 0.29 -1.5
1,536,102 - Dsui_1473 0.29 -2.3
1,536,110 - Dsui_1473 0.30 -0.7
1,536,110 - Dsui_1473 0.30 -3.4
1,536,136 - Dsui_1473 0.32 +0.3
1,536,159 - Dsui_1473 0.34 +0.3
1,536,250 + Dsui_1473 0.42 -1.3
1,536,273 + Dsui_1473 0.44 -2.0
1,536,311 + Dsui_1473 0.47 -0.7
1,536,480 + Dsui_1473 0.62 +0.3
1,536,488 - Dsui_1473 0.63 +0.3
1,536,531 + Dsui_1473 0.67 -0.7
1,536,531 + Dsui_1473 0.67 +0.3
1,536,598 - Dsui_1473 0.73 -1.3
1,536,625 + Dsui_1473 0.75 -0.7
1,536,694 - Dsui_1473 0.81 -2.0
1,536,696 + Dsui_1473 0.81 -1.7
1,536,711 + Dsui_1473 0.83 -0.5
1,536,719 - Dsui_1473 0.83 +0.3
1,536,774 + Dsui_1473 0.88 +0.3
1,536,909 + +0.3
1,536,990 + -1.7
1,536,998 - +0.3
1,537,032 + +0.3
1,537,042 + -0.7
1,537,042 + -0.7
1,537,051 - -3.8
1,537,068 + +0.3
1,537,113 - -1.2
1,537,122 - -0.2
1,537,128 - +0.3
1,537,156 + +0.3
1,537,173 - -0.4
1,537,221 + -0.7
1,537,237 - -0.4
1,537,245 + +0.3
1,537,250 + -0.7
1,537,253 - +0.3
1,537,253 - +1.9
1,537,309 - -2.7
1,537,357 + -0.2
1,537,370 + -0.1
1,537,380 - -0.7
1,537,413 - -0.7
1,537,413 - -0.7
1,537,413 - +0.3
1,537,413 - +0.3
1,537,467 + +0.0
1,537,467 + +0.1
1,537,473 + -0.0
1,537,475 - +0.3
1,537,475 - +0.3
1,537,482 - +0.3
1,537,500 + -0.2
1,537,532 + Dsui_1475 0.12 -0.2
1,537,551 + Dsui_1475 0.13 +0.1
1,537,603 + Dsui_1475 0.17 +0.0
1,537,620 + Dsui_1475 0.18 -0.0
1,537,628 - Dsui_1475 0.18 +0.3
1,537,628 - Dsui_1475 0.18 -1.3
1,537,633 - Dsui_1475 0.19 +0.3
1,537,672 + Dsui_1475 0.22 +0.1
1,537,706 + Dsui_1475 0.24 -0.0
1,537,715 + Dsui_1475 0.25 +0.5
1,537,755 + Dsui_1475 0.27 +0.1
1,537,802 + Dsui_1475 0.31 +0.2
1,537,802 + Dsui_1475 0.31 +0.1
1,537,803 + Dsui_1475 0.31 -0.1
1,537,870 + Dsui_1475 0.36 -0.0

Or see this region's nucleotide sequence