Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1432 and Dsui_1433 are separated by 8 nucleotides Dsui_1433 and Dsui_1434 overlap by 1 nucleotides Dsui_1434 and Dsui_1435 overlap by 1 nucleotides
Dsui_1432: Dsui_1432 - chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 1,486,202 to 1,487,329
_1432
Dsui_1433: Dsui_1433 - chemotaxis protein, at 1,487,338 to 1,487,835
_1433
Dsui_1434: Dsui_1434 - methylase of chemotaxis methyl-accepting protein, at 1,487,835 to 1,488,647
_1434
Dsui_1435: Dsui_1435 - chemotaxis signal transduction protein, at 1,488,647 to 1,489,204
_1435
Position (kb)
1487
1488 Strain fitness (log2 ratio)
-2
-1
0
1 at 1486.445 kb on - strand, within Dsui_1432 at 1486.472 kb on + strand, within Dsui_1432 at 1486.485 kb on - strand, within Dsui_1432 at 1486.503 kb on + strand, within Dsui_1432 at 1486.513 kb on - strand, within Dsui_1432 at 1486.620 kb on + strand, within Dsui_1432 at 1487.035 kb on + strand, within Dsui_1432 at 1487.077 kb on + strand, within Dsui_1432 at 1487.077 kb on + strand, within Dsui_1432 at 1487.120 kb on - strand, within Dsui_1432 at 1487.194 kb on - strand, within Dsui_1432 at 1487.216 kb on - strand, within Dsui_1432 at 1487.226 kb on - strand at 1487.350 kb on + strand at 1487.423 kb on + strand, within Dsui_1433 at 1487.431 kb on + strand, within Dsui_1433 at 1487.866 kb on + strand at 1487.874 kb on - strand at 1487.888 kb on + strand at 1487.988 kb on + strand, within Dsui_1434 at 1487.988 kb on + strand, within Dsui_1434 at 1487.991 kb on - strand, within Dsui_1434 at 1488.030 kb on - strand, within Dsui_1434 at 1488.207 kb on - strand, within Dsui_1434 at 1488.286 kb on + strand, within Dsui_1434 at 1488.286 kb on + strand, within Dsui_1434 at 1488.673 kb on - strand at 1488.724 kb on + strand, within Dsui_1435
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 1,486,445 - Dsui_1432 0.22 -0.4 1,486,472 + Dsui_1432 0.24 +0.3 1,486,485 - Dsui_1432 0.25 -0.1 1,486,503 + Dsui_1432 0.27 -2.3 1,486,513 - Dsui_1432 0.28 +0.1 1,486,620 + Dsui_1432 0.37 -2.7 1,487,035 + Dsui_1432 0.74 -0.7 1,487,077 + Dsui_1432 0.78 -1.7 1,487,077 + Dsui_1432 0.78 -2.0 1,487,120 - Dsui_1432 0.81 -0.1 1,487,194 - Dsui_1432 0.88 +0.1 1,487,216 - Dsui_1432 0.90 +0.1 1,487,226 - -0.3 1,487,350 + +0.3 1,487,423 + Dsui_1433 0.17 -1.7 1,487,431 + Dsui_1433 0.19 -2.0 1,487,866 + -2.0 1,487,874 - +0.1 1,487,888 + -0.7 1,487,988 + Dsui_1434 0.19 +0.3 1,487,988 + Dsui_1434 0.19 +0.3 1,487,991 - Dsui_1434 0.19 -0.1 1,488,030 - Dsui_1434 0.24 +0.1 1,488,207 - Dsui_1434 0.46 +0.1 1,488,286 + Dsui_1434 0.55 +0.3 1,488,286 + Dsui_1434 0.55 -1.7 1,488,673 - -0.0 1,488,724 + Dsui_1435 0.14 -1.3
Or see this region's nucleotide sequence