Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1102 and Dsui_1103 overlap by 10 nucleotides Dsui_1103 and Dsui_1104 are separated by 146 nucleotides Dsui_1104 and Dsui_1105 are separated by 64 nucleotides
Dsui_1102: Dsui_1102 - hypothetical protein, at 1,145,895 to 1,146,902
_1102
Dsui_1103: Dsui_1103 - DNA-binding domain-containing protein, AraC-type, at 1,146,893 to 1,147,978
_1103
Dsui_1104: Dsui_1104 - putative thioesterase, at 1,148,125 to 1,148,586
_1104
Dsui_1105: Dsui_1105 - methylmalonyl-CoA mutase family protein, at 1,148,651 to 1,151,932
_1105
Position (kb)
1146
1147
1148 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1145.934 kb on - strand at 1145.996 kb on - strand, within Dsui_1102 at 1146.123 kb on - strand, within Dsui_1102 at 1146.170 kb on + strand, within Dsui_1102 at 1146.175 kb on + strand, within Dsui_1102 at 1146.175 kb on + strand, within Dsui_1102 at 1146.183 kb on - strand, within Dsui_1102 at 1146.185 kb on + strand, within Dsui_1102 at 1146.206 kb on + strand, within Dsui_1102 at 1146.214 kb on - strand, within Dsui_1102 at 1146.214 kb on - strand, within Dsui_1102 at 1146.214 kb on - strand, within Dsui_1102 at 1146.214 kb on - strand, within Dsui_1102 at 1146.329 kb on + strand, within Dsui_1102 at 1146.382 kb on - strand, within Dsui_1102 at 1146.681 kb on + strand, within Dsui_1102 at 1146.683 kb on + strand, within Dsui_1102 at 1146.691 kb on - strand, within Dsui_1102 at 1146.725 kb on - strand, within Dsui_1102 at 1146.728 kb on + strand, within Dsui_1102 at 1146.736 kb on - strand, within Dsui_1102 at 1146.736 kb on - strand, within Dsui_1102 at 1146.753 kb on - strand, within Dsui_1102 at 1146.826 kb on - strand at 1146.831 kb on - strand at 1146.851 kb on - strand at 1146.877 kb on + strand at 1146.915 kb on - strand at 1147.219 kb on + strand, within Dsui_1103 at 1147.261 kb on + strand at 1147.398 kb on + strand, within Dsui_1103 at 1147.398 kb on + strand at 1147.403 kb on + strand, within Dsui_1103 at 1147.403 kb on + strand, within Dsui_1103 at 1147.406 kb on - strand, within Dsui_1103 at 1147.406 kb on - strand, within Dsui_1103 at 1147.406 kb on - strand, within Dsui_1103 at 1147.411 kb on - strand, within Dsui_1103 at 1147.416 kb on - strand, within Dsui_1103 at 1147.462 kb on + strand, within Dsui_1103 at 1147.558 kb on + strand, within Dsui_1103 at 1147.566 kb on - strand, within Dsui_1103 at 1147.585 kb on - strand, within Dsui_1103 at 1147.639 kb on + strand, within Dsui_1103 at 1147.781 kb on - strand, within Dsui_1103 at 1147.782 kb on - strand, within Dsui_1103 at 1147.788 kb on + strand at 1147.873 kb on - strand at 1147.885 kb on + strand at 1147.885 kb on + strand at 1147.893 kb on - strand at 1147.916 kb on + strand at 1147.921 kb on + strand at 1147.973 kb on + strand at 1147.976 kb on - strand at 1147.981 kb on - strand at 1148.224 kb on + strand, within Dsui_1104 at 1148.232 kb on - strand, within Dsui_1104 at 1148.232 kb on - strand, within Dsui_1104 at 1148.232 kb on - strand, within Dsui_1104 at 1148.244 kb on + strand, within Dsui_1104 at 1148.287 kb on - strand at 1148.344 kb on + strand, within Dsui_1104 at 1148.405 kb on + strand, within Dsui_1104 at 1148.424 kb on + strand, within Dsui_1104 at 1148.438 kb on - strand, within Dsui_1104 at 1148.708 kb on + strand at 1148.758 kb on - strand at 1148.787 kb on + strand at 1148.795 kb on - strand at 1148.843 kb on + strand at 1148.885 kb on - strand at 1148.950 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 1,145,934 - +0.8 1,145,996 - Dsui_1102 0.10 -0.5 1,146,123 - Dsui_1102 0.23 -1.4 1,146,170 + Dsui_1102 0.27 +0.1 1,146,175 + Dsui_1102 0.28 -0.1 1,146,175 + Dsui_1102 0.28 -0.5 1,146,183 - Dsui_1102 0.29 +0.3 1,146,185 + Dsui_1102 0.29 -0.1 1,146,206 + Dsui_1102 0.31 -0.1 1,146,214 - Dsui_1102 0.32 -1.8 1,146,214 - Dsui_1102 0.32 -1.3 1,146,214 - Dsui_1102 0.32 -1.3 1,146,214 - Dsui_1102 0.32 +0.3 1,146,329 + Dsui_1102 0.43 +0.0 1,146,382 - Dsui_1102 0.48 -1.7 1,146,681 + Dsui_1102 0.78 -0.4 1,146,683 + Dsui_1102 0.78 -1.3 1,146,691 - Dsui_1102 0.79 -0.7 1,146,725 - Dsui_1102 0.82 +0.3 1,146,728 + Dsui_1102 0.83 +0.5 1,146,736 - Dsui_1102 0.83 -3.1 1,146,736 - Dsui_1102 0.83 -1.7 1,146,753 - Dsui_1102 0.85 +0.3 1,146,826 - -0.9 1,146,831 - -1.7 1,146,851 - -3.5 1,146,877 + -0.3 1,146,915 - -1.5 1,147,219 + Dsui_1103 0.30 +0.3 1,147,261 + +0.3 1,147,398 + Dsui_1103 0.47 +0.5 1,147,398 + +0.3 1,147,403 + Dsui_1103 0.47 -1.3 1,147,403 + Dsui_1103 0.47 -0.7 1,147,406 - Dsui_1103 0.47 -0.1 1,147,406 - Dsui_1103 0.47 +0.2 1,147,406 - Dsui_1103 0.47 -0.0 1,147,411 - Dsui_1103 0.48 -0.2 1,147,416 - Dsui_1103 0.48 -0.0 1,147,462 + Dsui_1103 0.52 +0.3 1,147,558 + Dsui_1103 0.61 +1.3 1,147,566 - Dsui_1103 0.62 +0.2 1,147,585 - Dsui_1103 0.64 +0.1 1,147,639 + Dsui_1103 0.69 -2.1 1,147,781 - Dsui_1103 0.82 -0.0 1,147,782 - Dsui_1103 0.82 +0.0 1,147,788 + +0.3 1,147,873 - -0.0 1,147,885 + -0.7 1,147,885 + +0.3 1,147,893 - +0.2 1,147,916 + +0.3 1,147,921 + +0.3 1,147,973 + +0.3 1,147,976 - -0.4 1,147,981 - +1.7 1,148,224 + Dsui_1104 0.21 -1.7 1,148,232 - Dsui_1104 0.23 -1.2 1,148,232 - Dsui_1104 0.23 -0.7 1,148,232 - Dsui_1104 0.23 -2.5 1,148,244 + Dsui_1104 0.26 -0.7 1,148,287 - +0.3 1,148,344 + Dsui_1104 0.47 -0.7 1,148,405 + Dsui_1104 0.61 +0.3 1,148,424 + Dsui_1104 0.65 -2.7 1,148,438 - Dsui_1104 0.68 -1.7 1,148,708 + -2.0 1,148,758 - +0.3 1,148,787 + -0.7 1,148,795 - -0.7 1,148,843 + -0.7 1,148,885 - -0.7 1,148,950 + -0.7
Or see this region's nucleotide sequence