Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1097 and Dsui_1098 are separated by 108 nucleotides Dsui_1098 and Dsui_1099 are separated by 57 nucleotides Dsui_1099 and Dsui_1100 are separated by 9 nucleotides Dsui_1100 and Dsui_1101 are separated by 3 nucleotides
Dsui_1097: Dsui_1097 - NADH/NADPH-dependent glutamate synthase small subunit, at 1,139,961 to 1,141,427
_1097
Dsui_1098: Dsui_1098 - hypothetical protein, at 1,141,536 to 1,142,249
_1098
Dsui_1099: Dsui_1099 - UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase, at 1,142,307 to 1,143,665
_1099
Dsui_1100: Dsui_1100 - hypothetical protein, at 1,143,675 to 1,143,983
_1100
Dsui_1101: Dsui_1101 - glucosamine--fructose-6-phosphate aminotransferase, isomerizing, at 1,143,987 to 1,145,813
_1101
Position (kb) 1142
1143
1144 Strain fitness (log2 ratio) -1
0
1 at 1141.677 kb on + strand, within Dsui_1098 at 1141.765 kb on + strand, within Dsui_1098 at 1141.827 kb on + strand, within Dsui_1098 at 1141.901 kb on + strand, within Dsui_1098 at 1142.116 kb on - strand, within Dsui_1098 at 1142.171 kb on + strand, within Dsui_1098 at 1142.256 kb on + strand at 1142.256 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 1,141,677 + Dsui_1098 0.20 -0.2 1,141,765 + Dsui_1098 0.32 -0.2 1,141,827 + Dsui_1098 0.41 +0.1 1,141,901 + Dsui_1098 0.51 +0.1 1,142,116 - Dsui_1098 0.81 +0.3 1,142,171 + Dsui_1098 0.89 -1.2 1,142,256 + -0.1 1,142,256 + -0.3
Or see this region's nucleotide sequence