Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1069 and Dsui_1070 are separated by 111 nucleotides Dsui_1070 and Dsui_1071 are separated by 21 nucleotides Dsui_1071 and Dsui_1072 are separated by 52 nucleotides Dsui_1072 and Dsui_1073 overlap by 4 nucleotides
Dsui_1069: Dsui_1069 - Cytochrome c, at 1,103,211 to 1,103,885
_1069
Dsui_1070: Dsui_1070 - putative metal-binding protein, at 1,103,997 to 1,104,416
_1070
Dsui_1071: Dsui_1071 - hypothetical protein, at 1,104,438 to 1,104,779
_1071
Dsui_1072: Dsui_1072 - outer membrane protein, at 1,104,832 to 1,106,103
_1072
Dsui_1073: Dsui_1073 - RND family efflux transporter, MFP subunit, at 1,106,100 to 1,107,686
_1073
Position (kb)
1104
1105
1106
1107 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1103.850 kb on + strand at 1103.860 kb on + strand at 1103.868 kb on - strand at 1103.868 kb on - strand at 1103.923 kb on - strand at 1103.975 kb on - strand at 1103.975 kb on - strand at 1103.975 kb on - strand at 1103.975 kb on - strand at 1104.054 kb on - strand, within Dsui_1070 at 1104.054 kb on - strand, within Dsui_1070 at 1104.065 kb on + strand, within Dsui_1070 at 1104.073 kb on - strand, within Dsui_1070 at 1104.088 kb on + strand, within Dsui_1070 at 1104.096 kb on - strand, within Dsui_1070 at 1104.100 kb on + strand, within Dsui_1070 at 1104.147 kb on - strand, within Dsui_1070 at 1104.155 kb on + strand, within Dsui_1070 at 1104.284 kb on + strand, within Dsui_1070 at 1104.291 kb on + strand, within Dsui_1070 at 1104.292 kb on - strand, within Dsui_1070 at 1104.306 kb on - strand, within Dsui_1070 at 1104.318 kb on + strand, within Dsui_1070 at 1104.318 kb on + strand, within Dsui_1070 at 1104.318 kb on + strand, within Dsui_1070 at 1104.318 kb on + strand, within Dsui_1070 at 1104.367 kb on + strand, within Dsui_1070 at 1104.381 kb on + strand at 1104.466 kb on + strand at 1104.474 kb on + strand, within Dsui_1071 at 1104.476 kb on + strand, within Dsui_1071 at 1104.476 kb on + strand, within Dsui_1071 at 1104.484 kb on - strand, within Dsui_1071 at 1104.542 kb on + strand, within Dsui_1071 at 1104.556 kb on + strand, within Dsui_1071 at 1104.556 kb on + strand, within Dsui_1071 at 1104.580 kb on + strand, within Dsui_1071 at 1104.590 kb on + strand, within Dsui_1071 at 1104.633 kb on - strand, within Dsui_1071 at 1104.687 kb on - strand, within Dsui_1071 at 1104.703 kb on - strand, within Dsui_1071 at 1104.909 kb on + strand at 1104.923 kb on + strand at 1104.931 kb on - strand at 1104.936 kb on - strand at 1104.936 kb on - strand at 1105.082 kb on - strand, within Dsui_1072 at 1105.088 kb on + strand, within Dsui_1072 at 1105.107 kb on - strand, within Dsui_1072 at 1105.124 kb on + strand, within Dsui_1072 at 1105.128 kb on - strand, within Dsui_1072 at 1105.152 kb on - strand, within Dsui_1072 at 1105.188 kb on + strand, within Dsui_1072 at 1105.212 kb on - strand, within Dsui_1072 at 1105.266 kb on - strand, within Dsui_1072 at 1105.270 kb on + strand, within Dsui_1072 at 1105.272 kb on + strand, within Dsui_1072 at 1105.272 kb on + strand, within Dsui_1072 at 1105.272 kb on + strand, within Dsui_1072 at 1105.280 kb on - strand, within Dsui_1072 at 1105.297 kb on - strand, within Dsui_1072 at 1105.355 kb on + strand, within Dsui_1072 at 1105.406 kb on + strand, within Dsui_1072 at 1105.434 kb on + strand, within Dsui_1072 at 1105.442 kb on - strand, within Dsui_1072 at 1105.467 kb on + strand, within Dsui_1072 at 1105.527 kb on + strand, within Dsui_1072 at 1105.570 kb on - strand, within Dsui_1072 at 1105.603 kb on + strand, within Dsui_1072 at 1105.609 kb on + strand, within Dsui_1072 at 1105.609 kb on - strand, within Dsui_1072 at 1105.617 kb on + strand, within Dsui_1072 at 1105.635 kb on + strand, within Dsui_1072 at 1105.637 kb on + strand, within Dsui_1072 at 1105.637 kb on + strand, within Dsui_1072 at 1105.643 kb on - strand, within Dsui_1072 at 1105.723 kb on + strand, within Dsui_1072 at 1105.769 kb on + strand, within Dsui_1072 at 1105.779 kb on - strand, within Dsui_1072 at 1105.808 kb on + strand, within Dsui_1072 at 1105.811 kb on - strand, within Dsui_1072 at 1105.816 kb on - strand, within Dsui_1072 at 1105.816 kb on - strand, within Dsui_1072 at 1105.816 kb on - strand, within Dsui_1072 at 1105.893 kb on - strand, within Dsui_1072 at 1105.921 kb on - strand, within Dsui_1072 at 1105.946 kb on - strand, within Dsui_1072 at 1105.965 kb on - strand, within Dsui_1072 at 1105.989 kb on + strand at 1106.000 kb on - strand at 1106.043 kb on - strand at 1106.053 kb on + strand at 1106.081 kb on - strand at 1106.097 kb on + strand at 1106.105 kb on - strand at 1106.136 kb on + strand at 1106.156 kb on + strand at 1106.161 kb on + strand at 1106.162 kb on - strand at 1106.164 kb on - strand at 1106.164 kb on - strand at 1106.166 kb on + strand at 1106.166 kb on + strand at 1106.174 kb on - strand at 1106.193 kb on + strand at 1106.224 kb on + strand at 1106.235 kb on + strand at 1106.282 kb on - strand, within Dsui_1073 at 1106.348 kb on - strand, within Dsui_1073 at 1106.370 kb on - strand, within Dsui_1073 at 1106.370 kb on - strand, within Dsui_1073 at 1106.450 kb on + strand, within Dsui_1073 at 1106.471 kb on - strand, within Dsui_1073 at 1106.489 kb on + strand, within Dsui_1073 at 1106.489 kb on + strand, within Dsui_1073 at 1106.531 kb on + strand, within Dsui_1073 at 1106.531 kb on + strand, within Dsui_1073 at 1106.531 kb on + strand, within Dsui_1073 at 1106.531 kb on + strand, within Dsui_1073 at 1106.538 kb on - strand, within Dsui_1073 at 1106.539 kb on - strand, within Dsui_1073 at 1106.588 kb on + strand, within Dsui_1073 at 1106.593 kb on + strand, within Dsui_1073 at 1106.593 kb on + strand, within Dsui_1073 at 1106.593 kb on + strand, within Dsui_1073 at 1106.593 kb on + strand, within Dsui_1073 at 1106.594 kb on + strand, within Dsui_1073 at 1106.596 kb on - strand, within Dsui_1073 at 1106.601 kb on - strand, within Dsui_1073 at 1106.601 kb on - strand, within Dsui_1073 at 1106.601 kb on - strand, within Dsui_1073 at 1106.601 kb on - strand, within Dsui_1073 at 1106.601 kb on - strand, within Dsui_1073 at 1106.601 kb on - strand, within Dsui_1073 at 1106.603 kb on + strand, within Dsui_1073 at 1106.611 kb on - strand, within Dsui_1073 at 1106.613 kb on - strand, within Dsui_1073 at 1106.640 kb on + strand, within Dsui_1073 at 1106.640 kb on + strand, within Dsui_1073 at 1106.641 kb on + strand, within Dsui_1073 at 1106.648 kb on - strand, within Dsui_1073 at 1106.648 kb on - strand, within Dsui_1073 at 1106.648 kb on - strand, within Dsui_1073 at 1106.650 kb on + strand, within Dsui_1073 at 1106.673 kb on + strand, within Dsui_1073 at 1106.676 kb on - strand, within Dsui_1073 at 1106.697 kb on + strand, within Dsui_1073 at 1106.705 kb on - strand, within Dsui_1073 at 1106.747 kb on + strand, within Dsui_1073 at 1106.756 kb on - strand, within Dsui_1073 at 1106.787 kb on - strand, within Dsui_1073 at 1106.853 kb on + strand, within Dsui_1073 at 1106.853 kb on + strand, within Dsui_1073 at 1106.853 kb on + strand, within Dsui_1073 at 1106.861 kb on - strand, within Dsui_1073 at 1106.883 kb on + strand, within Dsui_1073 at 1106.891 kb on - strand, within Dsui_1073 at 1106.893 kb on + strand, within Dsui_1073 at 1106.897 kb on - strand, within Dsui_1073 at 1106.901 kb on - strand, within Dsui_1073 at 1106.925 kb on + strand, within Dsui_1073 at 1106.933 kb on - strand, within Dsui_1073 at 1106.936 kb on + strand, within Dsui_1073 at 1106.944 kb on - strand, within Dsui_1073 at 1106.950 kb on - strand, within Dsui_1073 at 1106.982 kb on + strand, within Dsui_1073 at 1106.997 kb on - strand, within Dsui_1073 at 1107.022 kb on + strand, within Dsui_1073 at 1107.022 kb on - strand, within Dsui_1073 at 1107.031 kb on - strand, within Dsui_1073 at 1107.041 kb on + strand, within Dsui_1073 at 1107.049 kb on - strand, within Dsui_1073 at 1107.065 kb on + strand, within Dsui_1073 at 1107.073 kb on - strand, within Dsui_1073 at 1107.083 kb on + strand, within Dsui_1073 at 1107.097 kb on + strand, within Dsui_1073
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 1,103,850 + +0.4 1,103,860 + -2.2 1,103,868 - +0.4 1,103,868 - +0.4 1,103,923 - +0.4 1,103,975 - -1.2 1,103,975 - -0.6 1,103,975 - -1.2 1,103,975 - -2.4 1,104,054 - Dsui_1070 0.14 -2.2 1,104,054 - Dsui_1070 0.14 +0.4 1,104,065 + Dsui_1070 0.16 -1.2 1,104,073 - Dsui_1070 0.18 +0.4 1,104,088 + Dsui_1070 0.22 +0.4 1,104,096 - Dsui_1070 0.24 +0.4 1,104,100 + Dsui_1070 0.25 -0.6 1,104,147 - Dsui_1070 0.36 +0.4 1,104,155 + Dsui_1070 0.38 +0.4 1,104,284 + Dsui_1070 0.68 -1.9 1,104,291 + Dsui_1070 0.70 +0.4 1,104,292 - Dsui_1070 0.70 +0.4 1,104,306 - Dsui_1070 0.74 -1.2 1,104,318 + Dsui_1070 0.76 +0.4 1,104,318 + Dsui_1070 0.76 +0.4 1,104,318 + Dsui_1070 0.76 +0.4 1,104,318 + Dsui_1070 0.76 -1.2 1,104,367 + Dsui_1070 0.88 -2.4 1,104,381 + -0.6 1,104,466 + +0.4 1,104,474 + Dsui_1071 0.11 -0.6 1,104,476 + Dsui_1071 0.11 +0.4 1,104,476 + Dsui_1071 0.11 +0.4 1,104,484 - Dsui_1071 0.13 +0.4 1,104,542 + Dsui_1071 0.30 -1.4 1,104,556 + Dsui_1071 0.35 +0.4 1,104,556 + Dsui_1071 0.35 +0.4 1,104,580 + Dsui_1071 0.42 -0.6 1,104,590 + Dsui_1071 0.44 -0.9 1,104,633 - Dsui_1071 0.57 +0.4 1,104,687 - Dsui_1071 0.73 +0.4 1,104,703 - Dsui_1071 0.77 +0.4 1,104,909 + -1.4 1,104,923 + -1.2 1,104,931 - +0.4 1,104,936 - -0.8 1,104,936 - -0.6 1,105,082 - Dsui_1072 0.20 -0.6 1,105,088 + Dsui_1072 0.20 -0.6 1,105,107 - Dsui_1072 0.22 -2.8 1,105,124 + Dsui_1072 0.23 +0.4 1,105,128 - Dsui_1072 0.23 -0.6 1,105,152 - Dsui_1072 0.25 -1.2 1,105,188 + Dsui_1072 0.28 +0.4 1,105,212 - Dsui_1072 0.30 +0.4 1,105,266 - Dsui_1072 0.34 +0.4 1,105,270 + Dsui_1072 0.34 +0.4 1,105,272 + Dsui_1072 0.35 -0.6 1,105,272 + Dsui_1072 0.35 -1.2 1,105,272 + Dsui_1072 0.35 -0.6 1,105,280 - Dsui_1072 0.35 +0.4 1,105,297 - Dsui_1072 0.37 -1.6 1,105,355 + Dsui_1072 0.41 -0.6 1,105,406 + Dsui_1072 0.45 -2.9 1,105,434 + Dsui_1072 0.47 +0.1 1,105,442 - Dsui_1072 0.48 +0.4 1,105,467 + Dsui_1072 0.50 -0.6 1,105,527 + Dsui_1072 0.55 -1.6 1,105,570 - Dsui_1072 0.58 -1.9 1,105,603 + Dsui_1072 0.61 +0.4 1,105,609 + Dsui_1072 0.61 +0.4 1,105,609 - Dsui_1072 0.61 +0.4 1,105,617 + Dsui_1072 0.62 -1.6 1,105,635 + Dsui_1072 0.63 +0.4 1,105,637 + Dsui_1072 0.63 -0.6 1,105,637 + Dsui_1072 0.63 +0.4 1,105,643 - Dsui_1072 0.64 -0.6 1,105,723 + Dsui_1072 0.70 +0.4 1,105,769 + Dsui_1072 0.74 +0.4 1,105,779 - Dsui_1072 0.74 -0.6 1,105,808 + Dsui_1072 0.77 -0.2 1,105,811 - Dsui_1072 0.77 +0.4 1,105,816 - Dsui_1072 0.77 -2.4 1,105,816 - Dsui_1072 0.77 -0.9 1,105,816 - Dsui_1072 0.77 +0.4 1,105,893 - Dsui_1072 0.83 -0.6 1,105,921 - Dsui_1072 0.86 -0.6 1,105,946 - Dsui_1072 0.88 +0.4 1,105,965 - Dsui_1072 0.89 +0.4 1,105,989 + -1.2 1,106,000 - -1.2 1,106,043 - -2.6 1,106,053 + -0.6 1,106,081 - +0.4 1,106,097 + +0.4 1,106,105 - +0.4 1,106,136 + -1.6 1,106,156 + -1.6 1,106,161 + -2.6 1,106,162 - +0.4 1,106,164 - -0.6 1,106,164 - -3.7 1,106,166 + -2.2 1,106,166 + +0.4 1,106,174 - -0.6 1,106,193 + -1.2 1,106,224 + +0.4 1,106,235 + -0.6 1,106,282 - Dsui_1073 0.11 -2.4 1,106,348 - Dsui_1073 0.16 -1.6 1,106,370 - Dsui_1073 0.17 -0.6 1,106,370 - Dsui_1073 0.17 +0.4 1,106,450 + Dsui_1073 0.22 +1.4 1,106,471 - Dsui_1073 0.23 -1.6 1,106,489 + Dsui_1073 0.25 -0.6 1,106,489 + Dsui_1073 0.25 -0.6 1,106,531 + Dsui_1073 0.27 -0.6 1,106,531 + Dsui_1073 0.27 -0.6 1,106,531 + Dsui_1073 0.27 -1.6 1,106,531 + Dsui_1073 0.27 +0.4 1,106,538 - Dsui_1073 0.28 -1.2 1,106,539 - Dsui_1073 0.28 +0.4 1,106,588 + Dsui_1073 0.31 +1.4 1,106,593 + Dsui_1073 0.31 -1.6 1,106,593 + Dsui_1073 0.31 -0.6 1,106,593 + Dsui_1073 0.31 -1.2 1,106,593 + Dsui_1073 0.31 -1.2 1,106,594 + Dsui_1073 0.31 -3.0 1,106,596 - Dsui_1073 0.31 +0.4 1,106,601 - Dsui_1073 0.32 -1.2 1,106,601 - Dsui_1073 0.32 -0.6 1,106,601 - Dsui_1073 0.32 +0.4 1,106,601 - Dsui_1073 0.32 +0.4 1,106,601 - Dsui_1073 0.32 -1.4 1,106,601 - Dsui_1073 0.32 -1.6 1,106,603 + Dsui_1073 0.32 -0.6 1,106,611 - Dsui_1073 0.32 -1.2 1,106,613 - Dsui_1073 0.32 -0.6 1,106,640 + Dsui_1073 0.34 +0.4 1,106,640 + Dsui_1073 0.34 -1.9 1,106,641 + Dsui_1073 0.34 +0.4 1,106,648 - Dsui_1073 0.35 +0.4 1,106,648 - Dsui_1073 0.35 -0.6 1,106,648 - Dsui_1073 0.35 -0.6 1,106,650 + Dsui_1073 0.35 +0.4 1,106,673 + Dsui_1073 0.36 +1.4 1,106,676 - Dsui_1073 0.36 +0.4 1,106,697 + Dsui_1073 0.38 -2.2 1,106,705 - Dsui_1073 0.38 -2.8 1,106,747 + Dsui_1073 0.41 -1.2 1,106,756 - Dsui_1073 0.41 +0.4 1,106,787 - Dsui_1073 0.43 -1.6 1,106,853 + Dsui_1073 0.47 +0.4 1,106,853 + Dsui_1073 0.47 +0.4 1,106,853 + Dsui_1073 0.47 -1.2 1,106,861 - Dsui_1073 0.48 -0.6 1,106,883 + Dsui_1073 0.49 -0.6 1,106,891 - Dsui_1073 0.50 +0.4 1,106,893 + Dsui_1073 0.50 +0.4 1,106,897 - Dsui_1073 0.50 -1.2 1,106,901 - Dsui_1073 0.50 +0.4 1,106,925 + Dsui_1073 0.52 +0.4 1,106,933 - Dsui_1073 0.52 -0.6 1,106,936 + Dsui_1073 0.53 +0.4 1,106,944 - Dsui_1073 0.53 -1.6 1,106,950 - Dsui_1073 0.54 +0.4 1,106,982 + Dsui_1073 0.56 -1.6 1,106,997 - Dsui_1073 0.57 -1.9 1,107,022 + Dsui_1073 0.58 -1.9 1,107,022 - Dsui_1073 0.58 +0.4 1,107,031 - Dsui_1073 0.59 -1.6 1,107,041 + Dsui_1073 0.59 +0.4 1,107,049 - Dsui_1073 0.60 -2.8 1,107,065 + Dsui_1073 0.61 -0.6 1,107,073 - Dsui_1073 0.61 -0.6 1,107,083 + Dsui_1073 0.62 +0.4 1,107,097 + Dsui_1073 0.63 -0.6
Or see this region's nucleotide sequence