Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1058 and Dsui_1059 are separated by 3 nucleotides Dsui_1059 and Dsui_1060 overlap by 4 nucleotides Dsui_1060 and Dsui_1061 are separated by 60 nucleotides
Dsui_1058: Dsui_1058 - hypothetical protein, at 1,091,393 to 1,091,602
_1058
Dsui_1059: Dsui_1059 - thiamine monophosphate synthase, at 1,091,606 to 1,092,553
_1059
Dsui_1060: Dsui_1060 - putative ATPase (AAA+ superfamily), at 1,092,550 to 1,093,473
_1060
Dsui_1061: Dsui_1061 - membrane-bound lytic murein transglycosylase, at 1,093,534 to 1,094,772
_1061
Position (kb)
1092
1093
1094 Strain fitness (log2 ratio)
-1
0
1 at 1091.558 kb on + strand, within Dsui_1058 at 1091.573 kb on - strand, within Dsui_1058 at 1091.596 kb on + strand at 1091.596 kb on + strand at 1091.604 kb on - strand at 1092.282 kb on - strand, within Dsui_1059 at 1092.357 kb on - strand, within Dsui_1059 at 1092.374 kb on - strand at 1092.561 kb on + strand at 1093.045 kb on - strand, within Dsui_1060 at 1093.047 kb on - strand, within Dsui_1060 at 1093.115 kb on + strand at 1093.123 kb on - strand, within Dsui_1060 at 1093.272 kb on - strand, within Dsui_1060 at 1093.345 kb on - strand, within Dsui_1060 at 1093.367 kb on - strand, within Dsui_1060 at 1093.372 kb on - strand, within Dsui_1060 at 1093.471 kb on - strand at 1093.476 kb on - strand at 1093.477 kb on - strand at 1093.481 kb on + strand at 1093.481 kb on + strand at 1093.518 kb on - strand at 1093.741 kb on + strand, within Dsui_1061 at 1093.882 kb on + strand, within Dsui_1061 at 1094.029 kb on + strand, within Dsui_1061 at 1094.053 kb on + strand, within Dsui_1061 at 1094.055 kb on + strand, within Dsui_1061 at 1094.063 kb on - strand, within Dsui_1061 at 1094.068 kb on - strand, within Dsui_1061 at 1094.192 kb on - strand, within Dsui_1061 at 1094.327 kb on + strand, within Dsui_1061 at 1094.427 kb on + strand, within Dsui_1061
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 1,091,558 + Dsui_1058 0.79 +0.9 1,091,573 - Dsui_1058 0.86 +0.3 1,091,596 + +0.7 1,091,596 + +0.4 1,091,604 - -0.7 1,092,282 - Dsui_1059 0.71 +1.0 1,092,357 - Dsui_1059 0.79 -0.7 1,092,374 - -0.2 1,092,561 + -0.6 1,093,045 - Dsui_1060 0.54 +0.4 1,093,047 - Dsui_1060 0.54 +0.3 1,093,115 + +0.4 1,093,123 - Dsui_1060 0.62 +0.7 1,093,272 - Dsui_1060 0.78 +0.5 1,093,345 - Dsui_1060 0.86 +1.1 1,093,367 - Dsui_1060 0.88 -0.1 1,093,372 - Dsui_1060 0.89 +0.2 1,093,471 - +0.1 1,093,476 - +0.8 1,093,477 - +0.4 1,093,481 + +0.4 1,093,481 + +0.4 1,093,518 - +0.4 1,093,741 + Dsui_1061 0.17 -1.1 1,093,882 + Dsui_1061 0.28 -1.1 1,094,029 + Dsui_1061 0.40 -1.1 1,094,053 + Dsui_1061 0.42 -0.9 1,094,055 + Dsui_1061 0.42 -1.0 1,094,063 - Dsui_1061 0.43 +0.4 1,094,068 - Dsui_1061 0.43 +0.4 1,094,192 - Dsui_1061 0.53 +0.4 1,094,327 + Dsui_1061 0.64 -1.1 1,094,427 + Dsui_1061 0.72 -1.1
Or see this region's nucleotide sequence