Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0975 and Dsui_0976 are separated by 70 nucleotides Dsui_0976 and Dsui_0977 are separated by 85 nucleotides
Dsui_0975: Dsui_0975 - acyl-CoA dehydrogenase, at 1,001,130 to 1,002,302
_0975
Dsui_0976: Dsui_0976 - acetyl-CoA acetyltransferase, at 1,002,373 to 1,003,554
_0976
Dsui_0977: Dsui_0977 - acyl-CoA dehydrogenase, at 1,003,640 to 1,004,776
_0977
Position (kb)
1002
1003
1004 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1001.421 kb on - strand, within Dsui_0975 at 1001.466 kb on + strand, within Dsui_0975 at 1001.516 kb on - strand, within Dsui_0975 at 1001.566 kb on - strand, within Dsui_0975 at 1001.578 kb on - strand, within Dsui_0975 at 1001.651 kb on + strand, within Dsui_0975 at 1001.746 kb on + strand, within Dsui_0975 at 1001.770 kb on + strand, within Dsui_0975 at 1001.954 kb on + strand, within Dsui_0975 at 1002.051 kb on + strand, within Dsui_0975 at 1002.259 kb on + strand at 1002.600 kb on + strand, within Dsui_0976 at 1002.626 kb on + strand, within Dsui_0976 at 1002.689 kb on + strand, within Dsui_0976 at 1002.884 kb on - strand, within Dsui_0976 at 1002.906 kb on - strand, within Dsui_0976 at 1002.943 kb on - strand, within Dsui_0976 at 1002.955 kb on + strand, within Dsui_0976 at 1003.072 kb on - strand, within Dsui_0976 at 1003.157 kb on - strand, within Dsui_0976 at 1003.171 kb on + strand, within Dsui_0976 at 1003.172 kb on - strand at 1003.244 kb on - strand, within Dsui_0976 at 1003.301 kb on + strand, within Dsui_0976 at 1003.466 kb on + strand at 1003.556 kb on - strand at 1003.556 kb on - strand at 1003.559 kb on + strand at 1003.559 kb on + strand at 1003.567 kb on - strand at 1003.748 kb on + strand at 1003.786 kb on + strand, within Dsui_0977 at 1003.856 kb on - strand, within Dsui_0977 at 1003.890 kb on + strand, within Dsui_0977 at 1003.933 kb on - strand, within Dsui_0977 at 1004.088 kb on + strand, within Dsui_0977 at 1004.154 kb on + strand, within Dsui_0977 at 1004.171 kb on + strand, within Dsui_0977 at 1004.189 kb on + strand, within Dsui_0977 at 1004.233 kb on + strand, within Dsui_0977
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 1,001,421 - Dsui_0975 0.25 +0.5 1,001,466 + Dsui_0975 0.29 -1.9 1,001,516 - Dsui_0975 0.33 +0.5 1,001,566 - Dsui_0975 0.37 -2.7 1,001,578 - Dsui_0975 0.38 -0.5 1,001,651 + Dsui_0975 0.44 -0.5 1,001,746 + Dsui_0975 0.53 +1.5 1,001,770 + Dsui_0975 0.55 +0.5 1,001,954 + Dsui_0975 0.70 -0.3 1,002,051 + Dsui_0975 0.79 -1.5 1,002,259 + -1.5 1,002,600 + Dsui_0976 0.19 +2.5 1,002,626 + Dsui_0976 0.21 +0.6 1,002,689 + Dsui_0976 0.27 -0.5 1,002,884 - Dsui_0976 0.43 -0.5 1,002,906 - Dsui_0976 0.45 +0.5 1,002,943 - Dsui_0976 0.48 -1.1 1,002,955 + Dsui_0976 0.49 +1.1 1,003,072 - Dsui_0976 0.59 +0.5 1,003,157 - Dsui_0976 0.66 -1.5 1,003,171 + Dsui_0976 0.68 -0.6 1,003,172 - +0.5 1,003,244 - Dsui_0976 0.74 -0.5 1,003,301 + Dsui_0976 0.79 +0.4 1,003,466 + -1.1 1,003,556 - -1.1 1,003,556 - -1.1 1,003,559 + +0.3 1,003,559 + -0.1 1,003,567 - -3.5 1,003,748 + -0.5 1,003,786 + Dsui_0977 0.13 +0.5 1,003,856 - Dsui_0977 0.19 +0.5 1,003,890 + Dsui_0977 0.22 -1.9 1,003,933 - Dsui_0977 0.26 +0.5 1,004,088 + Dsui_0977 0.39 +1.1 1,004,154 + Dsui_0977 0.45 +1.5 1,004,171 + Dsui_0977 0.47 -0.1 1,004,189 + Dsui_0977 0.48 +0.9 1,004,233 + Dsui_0977 0.52 +1.5
Or see this region's nucleotide sequence