Strain Fitness in Dechlorosoma suillum PS around Dsui_0976

Experiment: ALP with Chloride 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0975 and Dsui_0976 are separated by 70 nucleotidesDsui_0976 and Dsui_0977 are separated by 85 nucleotides Dsui_0975: Dsui_0975 - acyl-CoA dehydrogenase, at 1,001,130 to 1,002,302 _0975 Dsui_0976: Dsui_0976 - acetyl-CoA acetyltransferase, at 1,002,373 to 1,003,554 _0976 Dsui_0977: Dsui_0977 - acyl-CoA dehydrogenase, at 1,003,640 to 1,004,776 _0977 Position (kb) 1002 1003 1004Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1001.421 kb on - strand, within Dsui_0975at 1001.466 kb on + strand, within Dsui_0975at 1001.516 kb on - strand, within Dsui_0975at 1001.566 kb on - strand, within Dsui_0975at 1001.578 kb on - strand, within Dsui_0975at 1001.651 kb on + strand, within Dsui_0975at 1001.746 kb on + strand, within Dsui_0975at 1001.770 kb on + strand, within Dsui_0975at 1001.954 kb on + strand, within Dsui_0975at 1002.051 kb on + strand, within Dsui_0975at 1002.259 kb on + strandat 1002.600 kb on + strand, within Dsui_0976at 1002.626 kb on + strand, within Dsui_0976at 1002.689 kb on + strand, within Dsui_0976at 1002.884 kb on - strand, within Dsui_0976at 1002.906 kb on - strand, within Dsui_0976at 1002.943 kb on - strand, within Dsui_0976at 1002.955 kb on + strand, within Dsui_0976at 1003.072 kb on - strand, within Dsui_0976at 1003.157 kb on - strand, within Dsui_0976at 1003.171 kb on + strand, within Dsui_0976at 1003.172 kb on - strandat 1003.244 kb on - strand, within Dsui_0976at 1003.301 kb on + strand, within Dsui_0976at 1003.466 kb on + strandat 1003.556 kb on - strandat 1003.556 kb on - strandat 1003.559 kb on + strandat 1003.559 kb on + strandat 1003.567 kb on - strandat 1003.748 kb on + strandat 1003.786 kb on + strand, within Dsui_0977at 1003.856 kb on - strand, within Dsui_0977at 1003.890 kb on + strand, within Dsui_0977at 1003.933 kb on - strand, within Dsui_0977at 1004.088 kb on + strand, within Dsui_0977at 1004.154 kb on + strand, within Dsui_0977at 1004.171 kb on + strand, within Dsui_0977at 1004.189 kb on + strand, within Dsui_0977at 1004.233 kb on + strand, within Dsui_0977

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM
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1,001,421 - Dsui_0975 0.25 +0.5
1,001,466 + Dsui_0975 0.29 -1.9
1,001,516 - Dsui_0975 0.33 +0.5
1,001,566 - Dsui_0975 0.37 -2.7
1,001,578 - Dsui_0975 0.38 -0.5
1,001,651 + Dsui_0975 0.44 -0.5
1,001,746 + Dsui_0975 0.53 +1.5
1,001,770 + Dsui_0975 0.55 +0.5
1,001,954 + Dsui_0975 0.70 -0.3
1,002,051 + Dsui_0975 0.79 -1.5
1,002,259 + -1.5
1,002,600 + Dsui_0976 0.19 +2.5
1,002,626 + Dsui_0976 0.21 +0.6
1,002,689 + Dsui_0976 0.27 -0.5
1,002,884 - Dsui_0976 0.43 -0.5
1,002,906 - Dsui_0976 0.45 +0.5
1,002,943 - Dsui_0976 0.48 -1.1
1,002,955 + Dsui_0976 0.49 +1.1
1,003,072 - Dsui_0976 0.59 +0.5
1,003,157 - Dsui_0976 0.66 -1.5
1,003,171 + Dsui_0976 0.68 -0.6
1,003,172 - +0.5
1,003,244 - Dsui_0976 0.74 -0.5
1,003,301 + Dsui_0976 0.79 +0.4
1,003,466 + -1.1
1,003,556 - -1.1
1,003,556 - -1.1
1,003,559 + +0.3
1,003,559 + -0.1
1,003,567 - -3.5
1,003,748 + -0.5
1,003,786 + Dsui_0977 0.13 +0.5
1,003,856 - Dsui_0977 0.19 +0.5
1,003,890 + Dsui_0977 0.22 -1.9
1,003,933 - Dsui_0977 0.26 +0.5
1,004,088 + Dsui_0977 0.39 +1.1
1,004,154 + Dsui_0977 0.45 +1.5
1,004,171 + Dsui_0977 0.47 -0.1
1,004,189 + Dsui_0977 0.48 +0.9
1,004,233 + Dsui_0977 0.52 +1.5

Or see this region's nucleotide sequence