Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0719 and Dsui_0720 are separated by 60 nucleotides Dsui_0720 and Dsui_0721 are separated by 90 nucleotides Dsui_0721 and Dsui_0722 overlap by 4 nucleotides Dsui_0722 and Dsui_0723 are separated by 427 nucleotides
Dsui_0719: Dsui_0719 - uncharacterized protein involved in tolerance to divalent cations, at 712,936 to 713,277
_0719
Dsui_0720: Dsui_0720 - ABC-2 type transporter, NodJ family, at 713,338 to 714,138
_0720
Dsui_0721: Dsui_0721 - radical SAM additional 4Fe4S-binding domain protein, at 714,229 to 715,599
_0721
Dsui_0722: Dsui_0722 - hypothetical protein, at 715,596 to 715,766
_0722
Dsui_0723: Dsui_0723 - chemotaxis signal transduction protein, at 716,194 to 718,851
_0723
Position (kb) 714
715
716 Strain fitness (log2 ratio) -2
-1
0
1 at 713.270 kb on - strand at 713.426 kb on + strand, within Dsui_0720 at 713.482 kb on - strand, within Dsui_0720 at 713.509 kb on + strand, within Dsui_0720 at 713.517 kb on - strand, within Dsui_0720 at 713.553 kb on + strand, within Dsui_0720 at 713.577 kb on + strand, within Dsui_0720 at 713.585 kb on - strand, within Dsui_0720 at 713.585 kb on - strand, within Dsui_0720 at 713.639 kb on - strand, within Dsui_0720 at 713.639 kb on - strand, within Dsui_0720 at 713.655 kb on - strand, within Dsui_0720 at 713.740 kb on + strand, within Dsui_0720 at 713.765 kb on + strand at 713.773 kb on - strand, within Dsui_0720 at 713.939 kb on - strand, within Dsui_0720 at 714.024 kb on - strand, within Dsui_0720 at 714.029 kb on + strand at 714.199 kb on - strand at 714.261 kb on + strand at 714.317 kb on - strand at 714.325 kb on + strand at 714.353 kb on + strand at 714.449 kb on + strand, within Dsui_0721 at 714.452 kb on - strand, within Dsui_0721 at 714.467 kb on - strand, within Dsui_0721 at 714.492 kb on + strand, within Dsui_0721 at 714.523 kb on - strand, within Dsui_0721 at 714.612 kb on - strand, within Dsui_0721 at 714.696 kb on + strand, within Dsui_0721 at 714.851 kb on - strand, within Dsui_0721 at 714.883 kb on + strand at 714.899 kb on + strand, within Dsui_0721 at 714.931 kb on + strand, within Dsui_0721 at 714.940 kb on - strand, within Dsui_0721 at 715.059 kb on + strand, within Dsui_0721 at 715.087 kb on - strand, within Dsui_0721 at 715.158 kb on + strand, within Dsui_0721 at 715.265 kb on + strand, within Dsui_0721 at 715.384 kb on - strand, within Dsui_0721 at 715.392 kb on - strand, within Dsui_0721 at 715.587 kb on - strand at 715.683 kb on + strand at 715.714 kb on - strand at 715.772 kb on - strand at 715.866 kb on - strand at 715.971 kb on - strand at 716.079 kb on + strand at 716.087 kb on - strand at 716.125 kb on + strand at 716.478 kb on - strand, within Dsui_0723 at 716.496 kb on + strand at 716.564 kb on - strand, within Dsui_0723
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 713,270 - -0.7 713,426 + Dsui_0720 0.11 +0.4 713,482 - Dsui_0720 0.18 +0.1 713,509 + Dsui_0720 0.21 -0.6 713,517 - Dsui_0720 0.22 +0.2 713,553 + Dsui_0720 0.27 -0.6 713,577 + Dsui_0720 0.30 +0.4 713,585 - Dsui_0720 0.31 +0.7 713,585 - Dsui_0720 0.31 -0.2 713,639 - Dsui_0720 0.38 +0.3 713,639 - Dsui_0720 0.38 +0.0 713,655 - Dsui_0720 0.40 -0.1 713,740 + Dsui_0720 0.50 +0.4 713,765 + +0.4 713,773 - Dsui_0720 0.54 +0.1 713,939 - Dsui_0720 0.75 +0.1 714,024 - Dsui_0720 0.86 -0.1 714,029 + +0.4 714,199 - -1.2 714,261 + -1.2 714,317 - +0.4 714,325 + +0.4 714,353 + +0.4 714,449 + Dsui_0721 0.16 -1.6 714,452 - Dsui_0721 0.16 -1.6 714,467 - Dsui_0721 0.17 -1.6 714,492 + Dsui_0721 0.19 -1.6 714,523 - Dsui_0721 0.21 -1.2 714,612 - Dsui_0721 0.28 -1.2 714,696 + Dsui_0721 0.34 +0.4 714,851 - Dsui_0721 0.45 +0.4 714,883 + -0.6 714,899 + Dsui_0721 0.49 -0.6 714,931 + Dsui_0721 0.51 -0.6 714,940 - Dsui_0721 0.52 -0.6 715,059 + Dsui_0721 0.61 +0.4 715,087 - Dsui_0721 0.63 +0.4 715,158 + Dsui_0721 0.68 -1.2 715,265 + Dsui_0721 0.76 -2.2 715,384 - Dsui_0721 0.84 -1.9 715,392 - Dsui_0721 0.85 +0.4 715,587 - -0.6 715,683 + +0.4 715,714 - +0.4 715,772 - +0.4 715,866 - -2.2 715,971 - -0.0 716,079 + +0.0 716,087 - -0.6 716,125 + -1.2 716,478 - Dsui_0723 0.11 -1.6 716,496 + -0.6 716,564 - Dsui_0723 0.14 -1.2
Or see this region's nucleotide sequence