Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0617 and Dsui_0618 are separated by 10 nucleotides Dsui_0618 and Dsui_0619 are separated by 52 nucleotides Dsui_0619 and Dsui_0620 are separated by 96 nucleotides
Dsui_0617: Dsui_0617 - hypothetical protein, at 611,693 to 612,697
_0617
Dsui_0618: Dsui_0618 - putative lipoprotein involved in nitrous oxide reduction, at 612,708 to 613,274
_0618
Dsui_0619: Dsui_0619 - TonB-dependent siderophore receptor, at 613,327 to 615,690
_0619
Dsui_0620: Dsui_0620 - Fe2+-dicitrate sensor, membrane component, at 615,787 to 616,710
_0620
Position (kb)
613
614
615
616 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 612.422 kb on - strand, within Dsui_0617 at 612.578 kb on - strand at 612.603 kb on + strand at 612.675 kb on + strand at 612.746 kb on + strand at 612.810 kb on - strand, within Dsui_0618 at 612.904 kb on - strand, within Dsui_0618 at 612.916 kb on + strand, within Dsui_0618 at 612.954 kb on - strand, within Dsui_0618 at 613.094 kb on + strand, within Dsui_0618 at 613.161 kb on + strand, within Dsui_0618 at 613.259 kb on + strand at 613.259 kb on + strand at 613.259 kb on + strand at 613.277 kb on - strand at 613.290 kb on - strand at 613.401 kb on + strand at 613.401 kb on + strand at 613.569 kb on + strand at 613.569 kb on + strand, within Dsui_0619 at 613.575 kb on + strand, within Dsui_0619 at 613.577 kb on - strand, within Dsui_0619 at 613.631 kb on - strand, within Dsui_0619 at 613.631 kb on - strand, within Dsui_0619 at 613.631 kb on - strand, within Dsui_0619 at 613.730 kb on - strand at 613.730 kb on - strand, within Dsui_0619 at 613.768 kb on - strand, within Dsui_0619 at 613.825 kb on - strand, within Dsui_0619 at 613.825 kb on - strand, within Dsui_0619 at 613.857 kb on + strand at 613.867 kb on + strand, within Dsui_0619 at 613.916 kb on + strand, within Dsui_0619 at 613.941 kb on + strand at 613.969 kb on - strand at 614.051 kb on + strand, within Dsui_0619 at 614.326 kb on + strand, within Dsui_0619 at 614.326 kb on + strand, within Dsui_0619 at 614.334 kb on - strand at 614.334 kb on - strand, within Dsui_0619 at 614.335 kb on - strand, within Dsui_0619 at 614.434 kb on - strand, within Dsui_0619 at 614.454 kb on - strand at 614.481 kb on + strand at 614.489 kb on - strand, within Dsui_0619 at 614.613 kb on - strand at 614.613 kb on - strand, within Dsui_0619 at 614.744 kb on - strand, within Dsui_0619 at 615.051 kb on - strand, within Dsui_0619 at 615.073 kb on + strand, within Dsui_0619 at 615.125 kb on - strand, within Dsui_0619 at 615.176 kb on - strand at 615.194 kb on - strand, within Dsui_0619 at 615.418 kb on + strand, within Dsui_0619 at 615.501 kb on - strand at 615.509 kb on - strand at 615.600 kb on - strand at 615.623 kb on + strand at 615.623 kb on + strand at 615.696 kb on + strand at 615.708 kb on + strand at 615.813 kb on + strand at 615.823 kb on + strand at 615.973 kb on - strand, within Dsui_0620 at 615.983 kb on - strand, within Dsui_0620 at 615.988 kb on + strand at 615.990 kb on - strand at 616.067 kb on + strand, within Dsui_0620 at 616.072 kb on + strand, within Dsui_0620 at 616.080 kb on - strand, within Dsui_0620 at 616.137 kb on - strand, within Dsui_0620 at 616.179 kb on - strand, within Dsui_0620 at 616.226 kb on - strand, within Dsui_0620 at 616.231 kb on + strand, within Dsui_0620 at 616.290 kb on + strand, within Dsui_0620 at 616.533 kb on + strand, within Dsui_0620 at 616.681 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 612,422 - Dsui_0617 0.73 -2.0 612,578 - -0.7 612,603 + +0.3 612,675 + +0.6 612,746 + -1.8 612,810 - Dsui_0618 0.18 -2.0 612,904 - Dsui_0618 0.35 -1.2 612,916 + Dsui_0618 0.37 -1.7 612,954 - Dsui_0618 0.43 -0.7 613,094 + Dsui_0618 0.68 +0.3 613,161 + Dsui_0618 0.80 -3.5 613,259 + -1.7 613,259 + -2.0 613,259 + +0.3 613,277 - +0.3 613,290 - +0.3 613,401 + -1.2 613,401 + -1.7 613,569 + -0.7 613,569 + Dsui_0619 0.10 -2.0 613,575 + Dsui_0619 0.10 +0.3 613,577 - Dsui_0619 0.11 -0.7 613,631 - Dsui_0619 0.13 +0.3 613,631 - Dsui_0619 0.13 +0.3 613,631 - Dsui_0619 0.13 -1.2 613,730 - +0.3 613,730 - Dsui_0619 0.17 -1.2 613,768 - Dsui_0619 0.19 -1.2 613,825 - Dsui_0619 0.21 -1.2 613,825 - Dsui_0619 0.21 -2.7 613,857 + +0.3 613,867 + Dsui_0619 0.23 +0.3 613,916 + Dsui_0619 0.25 -2.0 613,941 + -0.7 613,969 - +0.3 614,051 + Dsui_0619 0.31 -0.7 614,326 + Dsui_0619 0.42 -0.7 614,326 + Dsui_0619 0.42 -1.7 614,334 - +0.3 614,334 - Dsui_0619 0.43 +0.3 614,335 - Dsui_0619 0.43 -2.0 614,434 - Dsui_0619 0.47 -1.2 614,454 - +0.3 614,481 + +0.3 614,489 - Dsui_0619 0.49 +0.3 614,613 - +0.3 614,613 - Dsui_0619 0.54 -1.7 614,744 - Dsui_0619 0.60 -0.7 615,051 - Dsui_0619 0.73 -1.2 615,073 + Dsui_0619 0.74 -1.7 615,125 - Dsui_0619 0.76 -0.7 615,176 - +0.3 615,194 - Dsui_0619 0.79 -1.7 615,418 + Dsui_0619 0.88 +0.3 615,501 - +0.3 615,509 - -1.7 615,600 - -1.7 615,623 + +0.3 615,623 + -1.7 615,696 + -2.8 615,708 + -1.2 615,813 + +0.3 615,823 + -2.0 615,973 - Dsui_0620 0.20 -0.2 615,983 - Dsui_0620 0.21 -1.7 615,988 + +0.3 615,990 - +0.3 616,067 + Dsui_0620 0.30 +0.3 616,072 + Dsui_0620 0.31 -2.5 616,080 - Dsui_0620 0.32 -1.7 616,137 - Dsui_0620 0.38 -3.4 616,179 - Dsui_0620 0.42 -0.7 616,226 - Dsui_0620 0.48 -1.7 616,231 + Dsui_0620 0.48 +0.3 616,290 + Dsui_0620 0.54 -0.7 616,533 + Dsui_0620 0.81 -1.2 616,681 + -0.7
Or see this region's nucleotide sequence