Strain Fitness in Dechlorosoma suillum PS around Dsui_0574

Experiment: ALP with Chloride 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0572 and Dsui_0573 are separated by 241 nucleotidesDsui_0573 and Dsui_0574 are separated by 16 nucleotidesDsui_0574 and Dsui_0575 are separated by 12 nucleotides Dsui_0572: Dsui_0572 - hypothetical protein, at 570,879 to 571,334 _0572 Dsui_0573: Dsui_0573 - ferredoxin-like protein, at 571,576 to 571,863 _0573 Dsui_0574: Dsui_0574 - flavin-dependent dehydrogenase, at 571,880 to 573,178 _0574 Dsui_0575: Dsui_0575 - electron transfer flavoprotein, alpha subunit, at 573,191 to 574,273 _0575 Position (kb) 571 572 573 574Strain fitness (log2 ratio) -3 -2 -1 0 1at 571.022 kb on - strand, within Dsui_0572at 571.041 kb on - strand, within Dsui_0572at 571.138 kb on - strand, within Dsui_0572at 571.171 kb on + strand, within Dsui_0572at 571.194 kb on + strand, within Dsui_0572at 571.251 kb on - strand, within Dsui_0572at 571.297 kb on - strandat 571.317 kb on - strandat 571.406 kb on + strandat 571.416 kb on - strandat 571.458 kb on + strandat 571.534 kb on + strandat 571.534 kb on - strandat 571.535 kb on + strandat 571.535 kb on + strandat 571.535 kb on + strandat 571.535 kb on + strandat 571.543 kb on - strandat 571.543 kb on - strandat 571.562 kb on + strandat 571.701 kb on + strand, within Dsui_0573at 571.721 kb on - strand, within Dsui_0573at 571.758 kb on - strandat 571.873 kb on - strandat 571.978 kb on + strandat 572.014 kb on - strand, within Dsui_0574at 572.014 kb on - strand, within Dsui_0574at 572.146 kb on + strandat 572.192 kb on + strand, within Dsui_0574at 572.303 kb on - strand, within Dsui_0574at 572.303 kb on - strandat 572.321 kb on - strand, within Dsui_0574at 572.339 kb on - strand, within Dsui_0574at 572.430 kb on + strandat 572.505 kb on + strand, within Dsui_0574at 572.638 kb on - strand, within Dsui_0574at 572.645 kb on - strandat 572.793 kb on - strand, within Dsui_0574at 572.821 kb on - strandat 572.838 kb on - strand, within Dsui_0574at 572.887 kb on - strand, within Dsui_0574at 572.977 kb on + strand, within Dsui_0574at 573.091 kb on + strandat 573.099 kb on - strandat 573.121 kb on - strandat 573.231 kb on - strandat 573.255 kb on + strandat 573.332 kb on - strand, within Dsui_0575at 573.334 kb on + strand, within Dsui_0575at 573.484 kb on + strand, within Dsui_0575at 573.716 kb on - strand, within Dsui_0575at 573.737 kb on - strand, within Dsui_0575at 573.864 kb on - strand, within Dsui_0575at 573.904 kb on + strandat 573.964 kb on + strand, within Dsui_0575at 574.022 kb on - strand, within Dsui_0575at 574.065 kb on - strand, within Dsui_0575at 574.077 kb on + strand, within Dsui_0575at 574.095 kb on + strand, within Dsui_0575at 574.155 kb on - strand, within Dsui_0575

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM
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571,022 - Dsui_0572 0.31 -0.4
571,041 - Dsui_0572 0.36 -0.2
571,138 - Dsui_0572 0.57 -2.3
571,171 + Dsui_0572 0.64 +0.3
571,194 + Dsui_0572 0.69 +0.3
571,251 - Dsui_0572 0.82 -0.5
571,297 - -0.7
571,317 - -0.7
571,406 + +0.3
571,416 - +0.3
571,458 + +0.3
571,534 + -1.3
571,534 - -0.7
571,535 + -2.0
571,535 + -0.7
571,535 + -0.7
571,535 + -2.3
571,543 - +0.6
571,543 - -1.5
571,562 + +0.3
571,701 + Dsui_0573 0.43 -1.7
571,721 - Dsui_0573 0.50 +0.3
571,758 - -0.7
571,873 - -1.3
571,978 + -0.7
572,014 - Dsui_0574 0.10 +0.3
572,014 - Dsui_0574 0.10 +0.3
572,146 + +0.3
572,192 + Dsui_0574 0.24 -2.7
572,303 - Dsui_0574 0.33 -1.7
572,303 - +0.3
572,321 - Dsui_0574 0.34 +0.3
572,339 - Dsui_0574 0.35 -0.7
572,430 + +0.3
572,505 + Dsui_0574 0.48 -1.3
572,638 - Dsui_0574 0.58 -2.0
572,645 - +0.3
572,793 - Dsui_0574 0.70 -2.0
572,821 - +0.3
572,838 - Dsui_0574 0.74 -2.3
572,887 - Dsui_0574 0.78 -0.7
572,977 + Dsui_0574 0.84 -0.7
573,091 + +0.3
573,099 - -1.7
573,121 - -1.3
573,231 - +0.3
573,255 + +0.3
573,332 - Dsui_0575 0.13 -2.3
573,334 + Dsui_0575 0.13 +0.3
573,484 + Dsui_0575 0.27 +0.3
573,716 - Dsui_0575 0.48 -3.3
573,737 - Dsui_0575 0.50 +0.3
573,864 - Dsui_0575 0.62 -2.0
573,904 + +0.3
573,964 + Dsui_0575 0.71 +0.3
574,022 - Dsui_0575 0.77 -0.1
574,065 - Dsui_0575 0.81 -0.7
574,077 + Dsui_0575 0.82 -1.3
574,095 + Dsui_0575 0.83 +0.3
574,155 - Dsui_0575 0.89 +0.3

Or see this region's nucleotide sequence