Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0544 and Dsui_0545 are separated by 94 nucleotides Dsui_0545 and Dsui_0546 are separated by 81 nucleotides Dsui_0546 and Dsui_0547 are separated by 60 nucleotides Dsui_0547 and Dsui_0548 are separated by 72 nucleotides Dsui_0548 and Dsui_0549 overlap by 1 nucleotides Dsui_0549 and Dsui_0550 are separated by 240 nucleotides
Dsui_0544: Dsui_0544 - flagellar basal body-associated protein, at 550,335 to 550,724
_0544
Dsui_0545: Dsui_0545 - tRNA-Thr, at 550,819 to 550,893
_0545
Dsui_0546: Dsui_0546 - tRNA-Lys, at 550,975 to 551,050
_0546
Dsui_0547: Dsui_0547 - tRNA-Lys, at 551,111 to 551,186
_0547
Dsui_0548: Dsui_0548 - putative transporter component, at 551,259 to 552,365
_0548
Dsui_0549: Dsui_0549 - queuosine biosynthesis protein QueC, at 552,365 to 553,054
_0549
Dsui_0550: Dsui_0550 - nitrogenase molybdenum-iron cofactor biosynthesis protein NifE, at 553,295 to 554,752
_0550
Position (kb)
551
552
553 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 550.301 kb on + strand at 550.378 kb on + strand, within Dsui_0544 at 550.385 kb on - strand, within Dsui_0544 at 550.508 kb on + strand, within Dsui_0544 at 550.689 kb on + strand at 550.699 kb on + strand at 550.707 kb on - strand at 550.738 kb on - strand at 550.751 kb on - strand at 550.754 kb on + strand at 550.799 kb on - strand at 550.806 kb on - strand at 550.809 kb on + strand at 551.340 kb on + strand at 551.391 kb on - strand, within Dsui_0548 at 551.529 kb on - strand, within Dsui_0548 at 551.585 kb on + strand at 551.616 kb on + strand, within Dsui_0548 at 551.943 kb on - strand, within Dsui_0548 at 552.007 kb on - strand, within Dsui_0548 at 552.127 kb on - strand, within Dsui_0548 at 552.191 kb on - strand, within Dsui_0548 at 552.306 kb on - strand at 552.487 kb on + strand at 552.551 kb on + strand, within Dsui_0549 at 552.559 kb on - strand, within Dsui_0549 at 552.591 kb on - strand, within Dsui_0549 at 552.619 kb on + strand at 552.702 kb on + strand at 552.705 kb on - strand, within Dsui_0549 at 552.717 kb on + strand at 552.717 kb on + strand at 552.730 kb on - strand, within Dsui_0549 at 552.745 kb on - strand, within Dsui_0549 at 552.768 kb on - strand, within Dsui_0549 at 552.808 kb on + strand, within Dsui_0549 at 552.862 kb on - strand at 552.955 kb on + strand at 553.058 kb on - strand at 553.068 kb on - strand at 553.114 kb on + strand at 553.192 kb on + strand at 553.219 kb on + strand at 553.219 kb on + strand at 553.227 kb on - strand at 553.229 kb on + strand at 553.231 kb on + strand at 553.357 kb on + strand at 553.363 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 550,301 + -1.1 550,378 + Dsui_0544 0.11 +0.0 550,385 - Dsui_0544 0.13 -0.3 550,508 + Dsui_0544 0.44 -2.1 550,689 + -0.3 550,699 + +0.3 550,707 - -0.7 550,738 - -0.1 550,751 - -0.3 550,754 + +1.3 550,799 - -0.2 550,806 - +0.0 550,809 + -1.3 551,340 + +0.3 551,391 - Dsui_0548 0.12 +0.2 551,529 - Dsui_0548 0.24 -0.3 551,585 + +0.3 551,616 + Dsui_0548 0.32 +0.3 551,943 - Dsui_0548 0.62 +0.2 552,007 - Dsui_0548 0.68 -0.1 552,127 - Dsui_0548 0.78 +0.0 552,191 - Dsui_0548 0.84 +0.8 552,306 - +0.1 552,487 + +0.3 552,551 + Dsui_0549 0.27 -1.7 552,559 - Dsui_0549 0.28 -0.6 552,591 - Dsui_0549 0.33 -0.5 552,619 + -0.7 552,702 + +0.3 552,705 - Dsui_0549 0.49 -0.5 552,717 + -1.3 552,717 + +0.3 552,730 - Dsui_0549 0.53 -1.1 552,745 - Dsui_0549 0.55 +1.0 552,768 - Dsui_0549 0.58 -0.8 552,808 + Dsui_0549 0.64 +0.3 552,862 - -1.7 552,955 + -0.7 553,058 - -0.5 553,068 - -0.1 553,114 + -2.0 553,192 + +0.3 553,219 + +0.3 553,219 + -0.7 553,227 - +0.3 553,229 + -0.7 553,231 + -3.0 553,357 + +0.3 553,363 + +0.3
Or see this region's nucleotide sequence