Strain Fitness in Dechlorosoma suillum PS around Dsui_0548

Experiment: ALP with Chloride 75 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0544 and Dsui_0545 are separated by 94 nucleotidesDsui_0545 and Dsui_0546 are separated by 81 nucleotidesDsui_0546 and Dsui_0547 are separated by 60 nucleotidesDsui_0547 and Dsui_0548 are separated by 72 nucleotidesDsui_0548 and Dsui_0549 overlap by 1 nucleotidesDsui_0549 and Dsui_0550 are separated by 240 nucleotides Dsui_0544: Dsui_0544 - flagellar basal body-associated protein, at 550,335 to 550,724 _0544 Dsui_0545: Dsui_0545 - tRNA-Thr, at 550,819 to 550,893 _0545 Dsui_0546: Dsui_0546 - tRNA-Lys, at 550,975 to 551,050 _0546 Dsui_0547: Dsui_0547 - tRNA-Lys, at 551,111 to 551,186 _0547 Dsui_0548: Dsui_0548 - putative transporter component, at 551,259 to 552,365 _0548 Dsui_0549: Dsui_0549 - queuosine biosynthesis protein QueC, at 552,365 to 553,054 _0549 Dsui_0550: Dsui_0550 - nitrogenase molybdenum-iron cofactor biosynthesis protein NifE, at 553,295 to 554,752 _0550 Position (kb) 551 552 553Strain fitness (log2 ratio) -3 -2 -1 0 1at 550.301 kb on + strandat 550.378 kb on + strand, within Dsui_0544at 550.385 kb on - strand, within Dsui_0544at 550.508 kb on + strand, within Dsui_0544at 550.689 kb on + strandat 550.699 kb on + strandat 550.707 kb on - strandat 550.738 kb on - strandat 550.751 kb on - strandat 550.754 kb on + strandat 550.799 kb on - strandat 550.806 kb on - strandat 550.809 kb on + strandat 551.340 kb on + strandat 551.391 kb on - strand, within Dsui_0548at 551.529 kb on - strand, within Dsui_0548at 551.585 kb on + strandat 551.616 kb on + strand, within Dsui_0548at 551.943 kb on - strand, within Dsui_0548at 552.007 kb on - strand, within Dsui_0548at 552.127 kb on - strand, within Dsui_0548at 552.191 kb on - strand, within Dsui_0548at 552.306 kb on - strandat 552.487 kb on + strandat 552.551 kb on + strand, within Dsui_0549at 552.559 kb on - strand, within Dsui_0549at 552.591 kb on - strand, within Dsui_0549at 552.619 kb on + strandat 552.702 kb on + strandat 552.705 kb on - strand, within Dsui_0549at 552.717 kb on + strandat 552.717 kb on + strandat 552.730 kb on - strand, within Dsui_0549at 552.745 kb on - strand, within Dsui_0549at 552.768 kb on - strand, within Dsui_0549at 552.808 kb on + strand, within Dsui_0549at 552.862 kb on - strandat 552.955 kb on + strandat 553.058 kb on - strandat 553.068 kb on - strandat 553.114 kb on + strandat 553.192 kb on + strandat 553.219 kb on + strandat 553.219 kb on + strandat 553.227 kb on - strandat 553.229 kb on + strandat 553.231 kb on + strandat 553.357 kb on + strandat 553.363 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM
remove
550,301 + -1.1
550,378 + Dsui_0544 0.11 +0.0
550,385 - Dsui_0544 0.13 -0.3
550,508 + Dsui_0544 0.44 -2.1
550,689 + -0.3
550,699 + +0.3
550,707 - -0.7
550,738 - -0.1
550,751 - -0.3
550,754 + +1.3
550,799 - -0.2
550,806 - +0.0
550,809 + -1.3
551,340 + +0.3
551,391 - Dsui_0548 0.12 +0.2
551,529 - Dsui_0548 0.24 -0.3
551,585 + +0.3
551,616 + Dsui_0548 0.32 +0.3
551,943 - Dsui_0548 0.62 +0.2
552,007 - Dsui_0548 0.68 -0.1
552,127 - Dsui_0548 0.78 +0.0
552,191 - Dsui_0548 0.84 +0.8
552,306 - +0.1
552,487 + +0.3
552,551 + Dsui_0549 0.27 -1.7
552,559 - Dsui_0549 0.28 -0.6
552,591 - Dsui_0549 0.33 -0.5
552,619 + -0.7
552,702 + +0.3
552,705 - Dsui_0549 0.49 -0.5
552,717 + -1.3
552,717 + +0.3
552,730 - Dsui_0549 0.53 -1.1
552,745 - Dsui_0549 0.55 +1.0
552,768 - Dsui_0549 0.58 -0.8
552,808 + Dsui_0549 0.64 +0.3
552,862 - -1.7
552,955 + -0.7
553,058 - -0.5
553,068 - -0.1
553,114 + -2.0
553,192 + +0.3
553,219 + +0.3
553,219 + -0.7
553,227 - +0.3
553,229 + -0.7
553,231 + -3.0
553,357 + +0.3
553,363 + +0.3

Or see this region's nucleotide sequence