Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0423 and Dsui_0424 are separated by 213 nucleotides Dsui_0424 and Dsui_0425 overlap by 4 nucleotides Dsui_0425 and Dsui_0426 are separated by 6 nucleotides
Dsui_0423: Dsui_0423 - putative permease, at 426,417 to 427,475
_0423
Dsui_0424: Dsui_0424 - phosphoketolase, at 427,689 to 430,109
_0424
Dsui_0425: Dsui_0425 - putative Fe-S oxidoreductase, at 430,106 to 430,381
_0425
Dsui_0426: Dsui_0426 - transcriptional regulator, at 430,388 to 431,302
_0426
Position (kb) 427
428
429
430
431 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 426.691 kb on - strand, within Dsui_0423 at 426.700 kb on + strand at 426.737 kb on + strand at 426.750 kb on - strand, within Dsui_0423 at 426.753 kb on + strand, within Dsui_0423 at 426.756 kb on - strand, within Dsui_0423 at 426.845 kb on - strand, within Dsui_0423 at 426.850 kb on - strand, within Dsui_0423 at 426.917 kb on - strand, within Dsui_0423 at 427.006 kb on - strand, within Dsui_0423 at 427.067 kb on - strand, within Dsui_0423 at 427.091 kb on + strand, within Dsui_0423 at 427.184 kb on - strand, within Dsui_0423 at 427.282 kb on - strand, within Dsui_0423 at 427.543 kb on + strand at 427.543 kb on + strand at 427.828 kb on + strand at 427.908 kb on + strand at 427.931 kb on - strand, within Dsui_0424 at 428.319 kb on - strand, within Dsui_0424 at 428.324 kb on - strand, within Dsui_0424 at 428.341 kb on - strand at 428.454 kb on + strand, within Dsui_0424 at 428.459 kb on + strand, within Dsui_0424 at 428.599 kb on + strand, within Dsui_0424 at 428.654 kb on + strand, within Dsui_0424 at 428.973 kb on - strand, within Dsui_0424 at 429.087 kb on + strand, within Dsui_0424 at 429.124 kb on + strand, within Dsui_0424 at 429.288 kb on - strand at 429.306 kb on - strand, within Dsui_0424 at 429.352 kb on + strand, within Dsui_0424 at 429.381 kb on + strand, within Dsui_0424 at 429.384 kb on - strand, within Dsui_0424 at 429.442 kb on + strand, within Dsui_0424 at 429.522 kb on + strand, within Dsui_0424 at 429.676 kb on + strand, within Dsui_0424 at 429.715 kb on + strand, within Dsui_0424 at 429.758 kb on + strand, within Dsui_0424 at 429.758 kb on + strand, within Dsui_0424 at 429.776 kb on - strand, within Dsui_0424 at 429.877 kb on + strand at 429.885 kb on - strand at 429.915 kb on - strand at 429.915 kb on - strand at 429.917 kb on + strand at 429.943 kb on + strand at 430.020 kb on - strand at 430.020 kb on - strand at 430.060 kb on + strand at 430.096 kb on - strand at 430.103 kb on + strand at 430.118 kb on + strand at 430.218 kb on + strand, within Dsui_0425 at 430.235 kb on + strand, within Dsui_0425 at 430.439 kb on + strand at 430.558 kb on + strand, within Dsui_0426 at 430.575 kb on + strand, within Dsui_0426 at 430.583 kb on - strand, within Dsui_0426 at 430.600 kb on - strand, within Dsui_0426 at 430.652 kb on + strand, within Dsui_0426 at 430.655 kb on - strand, within Dsui_0426 at 430.695 kb on - strand, within Dsui_0426 at 430.700 kb on - strand, within Dsui_0426 at 430.811 kb on - strand, within Dsui_0426 at 430.878 kb on - strand, within Dsui_0426 at 430.883 kb on - strand, within Dsui_0426 at 430.996 kb on - strand, within Dsui_0426 at 431.055 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 426,691 - Dsui_0423 0.26 -3.6 426,700 + -0.7 426,737 + +0.3 426,750 - Dsui_0423 0.31 -5.9 426,753 + Dsui_0423 0.32 -2.3 426,756 - Dsui_0423 0.32 -6.6 426,845 - Dsui_0423 0.40 -5.4 426,850 - Dsui_0423 0.41 -4.0 426,917 - Dsui_0423 0.47 -5.3 427,006 - Dsui_0423 0.56 -3.9 427,067 - Dsui_0423 0.61 -3.5 427,091 + Dsui_0423 0.64 -1.3 427,184 - Dsui_0423 0.72 -3.3 427,282 - Dsui_0423 0.82 -4.2 427,543 + +0.3 427,543 + -1.3 427,828 + -0.4 427,908 + -0.1 427,931 - Dsui_0424 0.10 -1.7 428,319 - Dsui_0424 0.26 -1.3 428,324 - Dsui_0424 0.26 -0.7 428,341 - +0.3 428,454 + Dsui_0424 0.32 +0.3 428,459 + Dsui_0424 0.32 +0.4 428,599 + Dsui_0424 0.38 -0.2 428,654 + Dsui_0424 0.40 +0.5 428,973 - Dsui_0424 0.53 -3.2 429,087 + Dsui_0424 0.58 -0.2 429,124 + Dsui_0424 0.59 -0.6 429,288 - +0.3 429,306 - Dsui_0424 0.67 -1.3 429,352 + Dsui_0424 0.69 -0.4 429,381 + Dsui_0424 0.70 +0.1 429,384 - Dsui_0424 0.70 -0.7 429,442 + Dsui_0424 0.72 -0.0 429,522 + Dsui_0424 0.76 -0.9 429,676 + Dsui_0424 0.82 -0.1 429,715 + Dsui_0424 0.84 -0.3 429,758 + Dsui_0424 0.85 -0.4 429,758 + Dsui_0424 0.85 -0.5 429,776 - Dsui_0424 0.86 -2.0 429,877 + -0.0 429,885 - -4.2 429,915 - +0.3 429,915 - -2.9 429,917 + -0.2 429,943 + -0.1 430,020 - -0.7 430,020 - +0.3 430,060 + +0.3 430,096 - -0.4 430,103 + -0.2 430,118 + +0.1 430,218 + Dsui_0425 0.41 -0.4 430,235 + Dsui_0425 0.47 -0.7 430,439 + +0.4 430,558 + Dsui_0426 0.19 -1.8 430,575 + Dsui_0426 0.20 -0.2 430,583 - Dsui_0426 0.21 -0.2 430,600 - Dsui_0426 0.23 -0.2 430,652 + Dsui_0426 0.29 -0.7 430,655 - Dsui_0426 0.29 -0.1 430,695 - Dsui_0426 0.34 +0.0 430,700 - Dsui_0426 0.34 -0.1 430,811 - Dsui_0426 0.46 +0.2 430,878 - Dsui_0426 0.54 -1.2 430,883 - Dsui_0426 0.54 -0.5 430,996 - Dsui_0426 0.66 -0.2 431,055 + -1.3
Or see this region's nucleotide sequence