Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0382 and Dsui_0383 are separated by 123 nucleotides Dsui_0383 and Dsui_0384 are separated by 99 nucleotides Dsui_0384 and Dsui_0385 are separated by 52 nucleotides Dsui_0385 and Dsui_0386 overlap by 4 nucleotides
Dsui_0382: Dsui_0382 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 382,578 to 383,228
_0382
Dsui_0383: Dsui_0383 - hypothetical protein, at 383,352 to 383,864
_0383
Dsui_0384: Dsui_0384 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 383,964 to 385,313
_0384
Dsui_0385: Dsui_0385 - hypothetical protein, at 385,366 to 385,977
_0385
Dsui_0386: Dsui_0386 - thiol-disulfide isomerase-like thioredoxin, at 385,974 to 386,522
_0386
Position (kb)
383
384
385
386 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 382.965 kb on + strand, within Dsui_0382 at 383.032 kb on - strand, within Dsui_0382 at 383.032 kb on - strand, within Dsui_0382 at 383.139 kb on - strand, within Dsui_0382 at 383.175 kb on + strand at 383.175 kb on + strand at 383.183 kb on - strand at 383.183 kb on - strand at 383.238 kb on - strand at 383.271 kb on - strand at 383.281 kb on - strand at 383.321 kb on - strand at 383.350 kb on + strand at 383.354 kb on - strand at 383.358 kb on - strand at 383.413 kb on - strand at 383.432 kb on - strand, within Dsui_0383 at 383.440 kb on + strand, within Dsui_0383 at 383.528 kb on + strand, within Dsui_0383 at 383.543 kb on + strand, within Dsui_0383 at 383.573 kb on - strand, within Dsui_0383 at 383.632 kb on + strand, within Dsui_0383 at 383.640 kb on - strand, within Dsui_0383 at 383.734 kb on - strand, within Dsui_0383 at 383.762 kb on + strand, within Dsui_0383 at 383.770 kb on - strand, within Dsui_0383 at 383.783 kb on + strand, within Dsui_0383 at 383.789 kb on + strand, within Dsui_0383 at 383.789 kb on + strand, within Dsui_0383 at 383.828 kb on + strand at 383.833 kb on + strand at 383.905 kb on - strand at 383.977 kb on + strand at 384.149 kb on - strand, within Dsui_0384 at 384.165 kb on - strand, within Dsui_0384 at 384.293 kb on - strand, within Dsui_0384 at 384.299 kb on + strand, within Dsui_0384 at 384.363 kb on + strand at 384.640 kb on + strand, within Dsui_0384 at 384.823 kb on + strand, within Dsui_0384 at 384.858 kb on - strand, within Dsui_0384 at 384.943 kb on + strand at 384.943 kb on + strand at 384.961 kb on - strand, within Dsui_0384 at 385.040 kb on - strand, within Dsui_0384 at 385.055 kb on - strand, within Dsui_0384 at 385.257 kb on - strand at 385.262 kb on - strand at 385.270 kb on - strand at 385.281 kb on - strand at 385.282 kb on + strand at 385.328 kb on + strand at 385.351 kb on - strand at 385.360 kb on - strand at 385.369 kb on + strand at 385.371 kb on - strand at 385.372 kb on - strand at 385.736 kb on + strand, within Dsui_0385 at 385.745 kb on + strand, within Dsui_0385 at 385.745 kb on + strand, within Dsui_0385 at 385.754 kb on - strand at 385.787 kb on + strand, within Dsui_0385 at 385.787 kb on + strand, within Dsui_0385 at 385.856 kb on + strand, within Dsui_0385 at 385.856 kb on + strand, within Dsui_0385 at 385.864 kb on + strand, within Dsui_0385 at 385.869 kb on + strand, within Dsui_0385 at 385.877 kb on - strand, within Dsui_0385 at 385.887 kb on - strand, within Dsui_0385 at 385.887 kb on - strand, within Dsui_0385 at 385.887 kb on - strand, within Dsui_0385 at 385.963 kb on - strand at 386.139 kb on + strand, within Dsui_0386 at 386.151 kb on + strand, within Dsui_0386 at 386.170 kb on + strand, within Dsui_0386 at 386.170 kb on + strand, within Dsui_0386 at 386.178 kb on - strand at 386.180 kb on + strand, within Dsui_0386 at 386.214 kb on - strand, within Dsui_0386 at 386.214 kb on - strand, within Dsui_0386 at 386.229 kb on - strand, within Dsui_0386 at 386.280 kb on - strand, within Dsui_0386 at 386.295 kb on + strand, within Dsui_0386 at 386.295 kb on + strand, within Dsui_0386 at 386.303 kb on - strand, within Dsui_0386
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 382,965 + Dsui_0382 0.59 +0.3 383,032 - Dsui_0382 0.70 -1.2 383,032 - Dsui_0382 0.70 -0.4 383,139 - Dsui_0382 0.86 -1.1 383,175 + +0.3 383,175 + -2.5 383,183 - -1.9 383,183 - +0.0 383,238 - -0.7 383,271 - +0.3 383,281 - -1.7 383,321 - +0.3 383,350 + -0.6 383,354 - +0.3 383,358 - -1.2 383,413 - +0.3 383,432 - Dsui_0383 0.16 -1.2 383,440 + Dsui_0383 0.17 -0.2 383,528 + Dsui_0383 0.34 -0.7 383,543 + Dsui_0383 0.37 +0.6 383,573 - Dsui_0383 0.43 -1.2 383,632 + Dsui_0383 0.55 -0.3 383,640 - Dsui_0383 0.56 -0.7 383,734 - Dsui_0383 0.74 -0.8 383,762 + Dsui_0383 0.80 -0.9 383,770 - Dsui_0383 0.81 -2.2 383,783 + Dsui_0383 0.84 -0.9 383,789 + Dsui_0383 0.85 -0.7 383,789 + Dsui_0383 0.85 +0.1 383,828 + -0.3 383,833 + -1.5 383,905 - -0.1 383,977 + +0.3 384,149 - Dsui_0384 0.14 +0.4 384,165 - Dsui_0384 0.15 +0.0 384,293 - Dsui_0384 0.24 +0.1 384,299 + Dsui_0384 0.25 -1.2 384,363 + +0.3 384,640 + Dsui_0384 0.50 -1.7 384,823 + Dsui_0384 0.64 -1.2 384,858 - Dsui_0384 0.66 -0.2 384,943 + +0.3 384,943 + +0.3 384,961 - Dsui_0384 0.74 +0.2 385,040 - Dsui_0384 0.80 +0.1 385,055 - Dsui_0384 0.81 +1.7 385,257 - -0.8 385,262 - +0.0 385,270 - -1.7 385,281 - -0.7 385,282 + -0.7 385,328 + -3.6 385,351 - -0.3 385,360 - +0.3 385,369 + -1.9 385,371 - +0.3 385,372 - +0.3 385,736 + Dsui_0385 0.60 -0.6 385,745 + Dsui_0385 0.62 -2.0 385,745 + Dsui_0385 0.62 -0.9 385,754 - +0.3 385,787 + Dsui_0385 0.69 -0.4 385,787 + Dsui_0385 0.69 +0.8 385,856 + Dsui_0385 0.80 -1.2 385,856 + Dsui_0385 0.80 -0.3 385,864 + Dsui_0385 0.81 +0.2 385,869 + Dsui_0385 0.82 +0.0 385,877 - Dsui_0385 0.83 -2.0 385,887 - Dsui_0385 0.85 -0.7 385,887 - Dsui_0385 0.85 -1.7 385,887 - Dsui_0385 0.85 -1.2 385,963 - -1.7 386,139 + Dsui_0386 0.30 +1.9 386,151 + Dsui_0386 0.32 +0.0 386,170 + Dsui_0386 0.36 -1.2 386,170 + Dsui_0386 0.36 -0.7 386,178 - +0.3 386,180 + Dsui_0386 0.38 -0.8 386,214 - Dsui_0386 0.44 +0.3 386,214 - Dsui_0386 0.44 -2.2 386,229 - Dsui_0386 0.46 -0.7 386,280 - Dsui_0386 0.56 -2.0 386,295 + Dsui_0386 0.58 -1.7 386,295 + Dsui_0386 0.58 -1.0 386,303 - Dsui_0386 0.60 +0.3
Or see this region's nucleotide sequence