Strain Fitness in Dechlorosoma suillum PS around Dsui_0384

Experiment: ALP with Chloride 75 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0382 and Dsui_0383 are separated by 123 nucleotidesDsui_0383 and Dsui_0384 are separated by 99 nucleotidesDsui_0384 and Dsui_0385 are separated by 52 nucleotidesDsui_0385 and Dsui_0386 overlap by 4 nucleotides Dsui_0382: Dsui_0382 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 382,578 to 383,228 _0382 Dsui_0383: Dsui_0383 - hypothetical protein, at 383,352 to 383,864 _0383 Dsui_0384: Dsui_0384 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 383,964 to 385,313 _0384 Dsui_0385: Dsui_0385 - hypothetical protein, at 385,366 to 385,977 _0385 Dsui_0386: Dsui_0386 - thiol-disulfide isomerase-like thioredoxin, at 385,974 to 386,522 _0386 Position (kb) 383 384 385 386Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 382.965 kb on + strand, within Dsui_0382at 383.032 kb on - strand, within Dsui_0382at 383.032 kb on - strand, within Dsui_0382at 383.139 kb on - strand, within Dsui_0382at 383.175 kb on + strandat 383.175 kb on + strandat 383.183 kb on - strandat 383.183 kb on - strandat 383.238 kb on - strandat 383.271 kb on - strandat 383.281 kb on - strandat 383.321 kb on - strandat 383.350 kb on + strandat 383.354 kb on - strandat 383.358 kb on - strandat 383.413 kb on - strandat 383.432 kb on - strand, within Dsui_0383at 383.440 kb on + strand, within Dsui_0383at 383.528 kb on + strand, within Dsui_0383at 383.543 kb on + strand, within Dsui_0383at 383.573 kb on - strand, within Dsui_0383at 383.632 kb on + strand, within Dsui_0383at 383.640 kb on - strand, within Dsui_0383at 383.734 kb on - strand, within Dsui_0383at 383.762 kb on + strand, within Dsui_0383at 383.770 kb on - strand, within Dsui_0383at 383.783 kb on + strand, within Dsui_0383at 383.789 kb on + strand, within Dsui_0383at 383.789 kb on + strand, within Dsui_0383at 383.828 kb on + strandat 383.833 kb on + strandat 383.905 kb on - strandat 383.977 kb on + strandat 384.149 kb on - strand, within Dsui_0384at 384.165 kb on - strand, within Dsui_0384at 384.293 kb on - strand, within Dsui_0384at 384.299 kb on + strand, within Dsui_0384at 384.363 kb on + strandat 384.640 kb on + strand, within Dsui_0384at 384.823 kb on + strand, within Dsui_0384at 384.858 kb on - strand, within Dsui_0384at 384.943 kb on + strandat 384.943 kb on + strandat 384.961 kb on - strand, within Dsui_0384at 385.040 kb on - strand, within Dsui_0384at 385.055 kb on - strand, within Dsui_0384at 385.257 kb on - strandat 385.262 kb on - strandat 385.270 kb on - strandat 385.281 kb on - strandat 385.282 kb on + strandat 385.328 kb on + strandat 385.351 kb on - strandat 385.360 kb on - strandat 385.369 kb on + strandat 385.371 kb on - strandat 385.372 kb on - strandat 385.736 kb on + strand, within Dsui_0385at 385.745 kb on + strand, within Dsui_0385at 385.745 kb on + strand, within Dsui_0385at 385.754 kb on - strandat 385.787 kb on + strand, within Dsui_0385at 385.787 kb on + strand, within Dsui_0385at 385.856 kb on + strand, within Dsui_0385at 385.856 kb on + strand, within Dsui_0385at 385.864 kb on + strand, within Dsui_0385at 385.869 kb on + strand, within Dsui_0385at 385.877 kb on - strand, within Dsui_0385at 385.887 kb on - strand, within Dsui_0385at 385.887 kb on - strand, within Dsui_0385at 385.887 kb on - strand, within Dsui_0385at 385.963 kb on - strandat 386.139 kb on + strand, within Dsui_0386at 386.151 kb on + strand, within Dsui_0386at 386.170 kb on + strand, within Dsui_0386at 386.170 kb on + strand, within Dsui_0386at 386.178 kb on - strandat 386.180 kb on + strand, within Dsui_0386at 386.214 kb on - strand, within Dsui_0386at 386.214 kb on - strand, within Dsui_0386at 386.229 kb on - strand, within Dsui_0386at 386.280 kb on - strand, within Dsui_0386at 386.295 kb on + strand, within Dsui_0386at 386.295 kb on + strand, within Dsui_0386at 386.303 kb on - strand, within Dsui_0386

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM
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382,965 + Dsui_0382 0.59 +0.3
383,032 - Dsui_0382 0.70 -1.2
383,032 - Dsui_0382 0.70 -0.4
383,139 - Dsui_0382 0.86 -1.1
383,175 + +0.3
383,175 + -2.5
383,183 - -1.9
383,183 - +0.0
383,238 - -0.7
383,271 - +0.3
383,281 - -1.7
383,321 - +0.3
383,350 + -0.6
383,354 - +0.3
383,358 - -1.2
383,413 - +0.3
383,432 - Dsui_0383 0.16 -1.2
383,440 + Dsui_0383 0.17 -0.2
383,528 + Dsui_0383 0.34 -0.7
383,543 + Dsui_0383 0.37 +0.6
383,573 - Dsui_0383 0.43 -1.2
383,632 + Dsui_0383 0.55 -0.3
383,640 - Dsui_0383 0.56 -0.7
383,734 - Dsui_0383 0.74 -0.8
383,762 + Dsui_0383 0.80 -0.9
383,770 - Dsui_0383 0.81 -2.2
383,783 + Dsui_0383 0.84 -0.9
383,789 + Dsui_0383 0.85 -0.7
383,789 + Dsui_0383 0.85 +0.1
383,828 + -0.3
383,833 + -1.5
383,905 - -0.1
383,977 + +0.3
384,149 - Dsui_0384 0.14 +0.4
384,165 - Dsui_0384 0.15 +0.0
384,293 - Dsui_0384 0.24 +0.1
384,299 + Dsui_0384 0.25 -1.2
384,363 + +0.3
384,640 + Dsui_0384 0.50 -1.7
384,823 + Dsui_0384 0.64 -1.2
384,858 - Dsui_0384 0.66 -0.2
384,943 + +0.3
384,943 + +0.3
384,961 - Dsui_0384 0.74 +0.2
385,040 - Dsui_0384 0.80 +0.1
385,055 - Dsui_0384 0.81 +1.7
385,257 - -0.8
385,262 - +0.0
385,270 - -1.7
385,281 - -0.7
385,282 + -0.7
385,328 + -3.6
385,351 - -0.3
385,360 - +0.3
385,369 + -1.9
385,371 - +0.3
385,372 - +0.3
385,736 + Dsui_0385 0.60 -0.6
385,745 + Dsui_0385 0.62 -2.0
385,745 + Dsui_0385 0.62 -0.9
385,754 - +0.3
385,787 + Dsui_0385 0.69 -0.4
385,787 + Dsui_0385 0.69 +0.8
385,856 + Dsui_0385 0.80 -1.2
385,856 + Dsui_0385 0.80 -0.3
385,864 + Dsui_0385 0.81 +0.2
385,869 + Dsui_0385 0.82 +0.0
385,877 - Dsui_0385 0.83 -2.0
385,887 - Dsui_0385 0.85 -0.7
385,887 - Dsui_0385 0.85 -1.7
385,887 - Dsui_0385 0.85 -1.2
385,963 - -1.7
386,139 + Dsui_0386 0.30 +1.9
386,151 + Dsui_0386 0.32 +0.0
386,170 + Dsui_0386 0.36 -1.2
386,170 + Dsui_0386 0.36 -0.7
386,178 - +0.3
386,180 + Dsui_0386 0.38 -0.8
386,214 - Dsui_0386 0.44 +0.3
386,214 - Dsui_0386 0.44 -2.2
386,229 - Dsui_0386 0.46 -0.7
386,280 - Dsui_0386 0.56 -2.0
386,295 + Dsui_0386 0.58 -1.7
386,295 + Dsui_0386 0.58 -1.0
386,303 - Dsui_0386 0.60 +0.3

Or see this region's nucleotide sequence