Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0171 and Dsui_0172 overlap by 4 nucleotides Dsui_0172 and Dsui_0173 overlap by 4 nucleotides Dsui_0173 and Dsui_0174 overlap by 4 nucleotides Dsui_0174 and Dsui_0175 overlap by 1 nucleotides
Dsui_0171: Dsui_0171 - putative transcriptional regulator, at 174,852 to 175,070
_0171
Dsui_0172: Dsui_0172 - hypothetical protein, at 175,067 to 175,741
_0172
Dsui_0173: Dsui_0173 - site-specific DNA methylase, at 175,738 to 177,546
_0173
Dsui_0174: Dsui_0174 - hypothetical protein, at 177,543 to 178,073
_0174
Dsui_0175: Dsui_0175 - hypothetical protein, at 178,073 to 179,881
_0175
Position (kb) 175
176
177
178 Strain fitness (log2 ratio) -2
-1
0
1 at 174.753 kb on + strand at 174.780 kb on - strand at 174.780 kb on - strand at 174.785 kb on - strand at 174.822 kb on + strand at 174.823 kb on - strand at 174.823 kb on - strand at 174.955 kb on + strand, within Dsui_0171 at 174.982 kb on + strand, within Dsui_0171 at 174.990 kb on - strand, within Dsui_0171 at 175.018 kb on - strand, within Dsui_0171 at 175.028 kb on + strand, within Dsui_0171 at 175.041 kb on - strand, within Dsui_0171 at 175.074 kb on - strand at 175.122 kb on + strand at 175.122 kb on + strand at 175.123 kb on + strand at 175.212 kb on + strand, within Dsui_0172 at 175.215 kb on - strand, within Dsui_0172 at 175.238 kb on + strand at 175.246 kb on - strand, within Dsui_0172 at 175.257 kb on - strand at 175.274 kb on + strand, within Dsui_0172 at 175.307 kb on - strand, within Dsui_0172 at 175.347 kb on + strand, within Dsui_0172 at 175.399 kb on + strand at 175.622 kb on + strand, within Dsui_0172 at 175.625 kb on - strand, within Dsui_0172 at 175.635 kb on + strand, within Dsui_0172 at 175.660 kb on - strand, within Dsui_0172 at 175.735 kb on + strand at 175.809 kb on + strand at 175.817 kb on - strand at 175.834 kb on - strand at 175.867 kb on + strand at 175.875 kb on - strand at 175.950 kb on + strand, within Dsui_0173 at 176.266 kb on - strand, within Dsui_0173 at 176.363 kb on + strand at 176.628 kb on - strand, within Dsui_0173 at 176.629 kb on + strand at 176.728 kb on - strand, within Dsui_0173 at 176.849 kb on + strand, within Dsui_0173 at 176.870 kb on - strand at 176.904 kb on + strand at 176.944 kb on - strand at 177.139 kb on + strand at 177.195 kb on + strand at 177.200 kb on + strand at 177.336 kb on + strand, within Dsui_0173 at 177.443 kb on + strand at 177.534 kb on - strand at 177.649 kb on - strand at 177.705 kb on + strand at 177.766 kb on + strand, within Dsui_0174 at 177.774 kb on - strand, within Dsui_0174 at 177.787 kb on + strand, within Dsui_0174 at 177.945 kb on + strand, within Dsui_0174 at 177.995 kb on - strand at 178.228 kb on + strand at 178.265 kb on + strand, within Dsui_0175 at 178.349 kb on + strand, within Dsui_0175 at 178.354 kb on + strand, within Dsui_0175 at 178.371 kb on - strand, within Dsui_0175
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 174,753 + -0.6 174,780 - +0.4 174,780 - -0.6 174,785 - -0.6 174,822 + +0.4 174,823 - -1.9 174,823 - +0.4 174,955 + Dsui_0171 0.47 -0.6 174,982 + Dsui_0171 0.59 +0.4 174,990 - Dsui_0171 0.63 -1.9 175,018 - Dsui_0171 0.76 -1.9 175,028 + Dsui_0171 0.80 -2.2 175,041 - Dsui_0171 0.86 -2.4 175,074 - +0.4 175,122 + -0.1 175,122 + +0.1 175,123 + -0.6 175,212 + Dsui_0172 0.21 -0.6 175,215 - Dsui_0172 0.22 -2.4 175,238 + -0.6 175,246 - Dsui_0172 0.27 -1.2 175,257 - +0.4 175,274 + Dsui_0172 0.31 +0.4 175,307 - Dsui_0172 0.36 +0.4 175,347 + Dsui_0172 0.41 -2.7 175,399 + +0.4 175,622 + Dsui_0172 0.82 -0.6 175,625 - Dsui_0172 0.83 -0.6 175,635 + Dsui_0172 0.84 -0.6 175,660 - Dsui_0172 0.88 -2.6 175,735 + +0.4 175,809 + +0.4 175,817 - +0.4 175,834 - -1.2 175,867 + -0.6 175,875 - -0.6 175,950 + Dsui_0173 0.12 +0.4 176,266 - Dsui_0173 0.29 -1.6 176,363 + -0.6 176,628 - Dsui_0173 0.49 -1.2 176,629 + +0.4 176,728 - Dsui_0173 0.55 -1.2 176,849 + Dsui_0173 0.61 -1.6 176,870 - +0.4 176,904 + +0.4 176,944 - +0.4 177,139 + +0.4 177,195 + +0.4 177,200 + +0.4 177,336 + Dsui_0173 0.88 +0.4 177,443 + -0.6 177,534 - -1.6 177,649 - +0.4 177,705 + -0.6 177,766 + Dsui_0174 0.42 -0.6 177,774 - Dsui_0174 0.44 -2.2 177,787 + Dsui_0174 0.46 -1.9 177,945 + Dsui_0174 0.76 -2.7 177,995 - +0.4 178,228 + -1.2 178,265 + Dsui_0175 0.11 +0.4 178,349 + Dsui_0175 0.15 +0.4 178,354 + Dsui_0175 0.16 -0.6 178,371 - Dsui_0175 0.16 -0.6
Or see this region's nucleotide sequence