Experiment: ALP with Chloride 75 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0040 and Dsui_0041 are separated by 38 nucleotides Dsui_0041 and Dsui_0042 are separated by 134 nucleotides Dsui_0042 and Dsui_0043 are separated by 135 nucleotides
Dsui_0040: Dsui_0040 - FAD-dependent dehydrogenase, at 36,401 to 38,029
_0040
Dsui_0041: Dsui_0041 - hypothetical protein, at 38,068 to 39,075
_0041
Dsui_0042: Dsui_0042 - Protein of unknown function (DUF2892), at 39,210 to 39,401
_0042
Dsui_0043: Dsui_0043 - cAMP-binding protein, at 39,537 to 40,205
_0043
Position (kb) 38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 37.133 kb on + strand, within Dsui_0040 at 37.195 kb on + strand, within Dsui_0040 at 37.229 kb on - strand, within Dsui_0040 at 37.232 kb on - strand, within Dsui_0040 at 37.304 kb on - strand, within Dsui_0040 at 37.562 kb on + strand, within Dsui_0040 at 37.680 kb on - strand, within Dsui_0040 at 37.694 kb on + strand, within Dsui_0040 at 37.704 kb on + strand, within Dsui_0040 at 37.715 kb on + strand, within Dsui_0040 at 37.787 kb on + strand, within Dsui_0040 at 37.860 kb on + strand, within Dsui_0040 at 37.863 kb on - strand, within Dsui_0040 at 38.066 kb on + strand at 38.078 kb on - strand at 38.135 kb on - strand at 38.146 kb on + strand at 38.206 kb on - strand at 38.229 kb on - strand at 38.347 kb on - strand, within Dsui_0041 at 38.452 kb on - strand at 38.459 kb on - strand at 38.466 kb on + strand, within Dsui_0041 at 38.510 kb on + strand, within Dsui_0041 at 38.518 kb on - strand, within Dsui_0041 at 38.640 kb on - strand, within Dsui_0041 at 38.686 kb on + strand, within Dsui_0041 at 38.692 kb on + strand, within Dsui_0041 at 38.819 kb on + strand, within Dsui_0041 at 38.871 kb on - strand at 38.895 kb on + strand, within Dsui_0041 at 38.895 kb on + strand, within Dsui_0041 at 38.903 kb on - strand, within Dsui_0041 at 38.950 kb on + strand, within Dsui_0041 at 39.023 kb on - strand at 39.026 kb on + strand at 39.198 kb on + strand at 39.208 kb on + strand at 39.249 kb on + strand at 39.321 kb on + strand, within Dsui_0042 at 39.352 kb on - strand, within Dsui_0042 at 39.438 kb on - strand at 39.463 kb on - strand at 39.628 kb on + strand at 39.639 kb on - strand, within Dsui_0043 at 39.666 kb on + strand at 39.712 kb on - strand, within Dsui_0043 at 39.914 kb on + strand, within Dsui_0043 at 39.933 kb on + strand, within Dsui_0043 at 39.933 kb on + strand, within Dsui_0043 at 39.941 kb on - strand, within Dsui_0043 at 39.982 kb on + strand at 39.990 kb on - strand, within Dsui_0043 at 40.025 kb on + strand at 40.044 kb on - strand, within Dsui_0043
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Chloride 75 mM remove 37,133 + Dsui_0040 0.45 +0.1 37,195 + Dsui_0040 0.49 +0.0 37,229 - Dsui_0040 0.51 -1.2 37,232 - Dsui_0040 0.51 -0.6 37,304 - Dsui_0040 0.55 +0.4 37,562 + Dsui_0040 0.71 -0.7 37,680 - Dsui_0040 0.79 +0.4 37,694 + Dsui_0040 0.79 -0.2 37,704 + Dsui_0040 0.80 -0.0 37,715 + Dsui_0040 0.81 -0.1 37,787 + Dsui_0040 0.85 +0.0 37,860 + Dsui_0040 0.90 -0.4 37,863 - Dsui_0040 0.90 -2.2 38,066 + +0.2 38,078 - -3.0 38,135 - -1.2 38,146 + -0.1 38,206 - +0.4 38,229 - +0.4 38,347 - Dsui_0041 0.28 -1.6 38,452 - -0.6 38,459 - -0.6 38,466 + Dsui_0041 0.39 -0.2 38,510 + Dsui_0041 0.44 +0.7 38,518 - Dsui_0041 0.45 -1.2 38,640 - Dsui_0041 0.57 -1.9 38,686 + Dsui_0041 0.61 +0.2 38,692 + Dsui_0041 0.62 +0.2 38,819 + Dsui_0041 0.75 -0.1 38,871 - +0.4 38,895 + Dsui_0041 0.82 -0.1 38,895 + Dsui_0041 0.82 +1.0 38,903 - Dsui_0041 0.83 -0.6 38,950 + Dsui_0041 0.88 +0.6 39,023 - -1.9 39,026 + +0.7 39,198 + -1.6 39,208 + -2.2 39,249 + +0.4 39,321 + Dsui_0042 0.58 +0.4 39,352 - Dsui_0042 0.74 -0.0 39,438 - -0.2 39,463 - -0.5 39,628 + -0.6 39,639 - Dsui_0043 0.15 +0.3 39,666 + -0.6 39,712 - Dsui_0043 0.26 +0.1 39,914 + Dsui_0043 0.56 +0.4 39,933 + Dsui_0043 0.59 -1.6 39,933 + Dsui_0043 0.59 +0.0 39,941 - Dsui_0043 0.60 +0.0 39,982 + -1.2 39,990 - Dsui_0043 0.68 -0.2 40,025 + +0.4 40,044 - Dsui_0043 0.76 +0.3
Or see this region's nucleotide sequence