Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3163

Experiment: L-Threonine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3162 and DvMF_3163 are separated by 350 nucleotidesDvMF_3163 and DvMF_3164 are separated by 239 nucleotides DvMF_3162: DvMF_3162 - Smr protein/MutS2 (RefSeq), at 3,987,613 to 3,988,965 _3162 DvMF_3163: DvMF_3163 - signal peptide peptidase SppA, 36K type (RefSeq), at 3,989,316 to 3,990,323 _3163 DvMF_3164: DvMF_3164 - Cobyrinic acid ac-diamide synthase (RefSeq), at 3,990,563 to 3,991,516 _3164 Position (kb) 3989 3990 3991Strain fitness (log2 ratio) -1 0 1at 3988.485 kb on + strand, within DvMF_3162at 3988.954 kb on + strandat 3989.159 kb on - strandat 3989.183 kb on - strandat 3989.482 kb on - strand, within DvMF_3163at 3989.745 kb on + strand, within DvMF_3163at 3989.796 kb on - strand, within DvMF_3163at 3989.854 kb on + strand, within DvMF_3163at 3990.185 kb on - strand, within DvMF_3163at 3990.247 kb on + strandat 3990.806 kb on - strand, within DvMF_3164

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine as nutrient
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3,988,485 + DvMF_3162 0.64 +0.4
3,988,954 + +0.3
3,989,159 - +1.3
3,989,183 - +0.2
3,989,482 - DvMF_3163 0.16 +0.6
3,989,745 + DvMF_3163 0.43 +1.0
3,989,796 - DvMF_3163 0.48 +0.4
3,989,854 + DvMF_3163 0.53 +0.5
3,990,185 - DvMF_3163 0.86 +0.4
3,990,247 + +0.4
3,990,806 - DvMF_3164 0.25 +0.7

Or see this region's nucleotide sequence