Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1347

Experiment: L-Threonine as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1346 and DvMF_1347 are separated by 184 nucleotidesDvMF_1347 and DvMF_1348 are separated by 284 nucleotides DvMF_1346: DvMF_1346 - Glu/Leu/Phe/Val dehydrogenase (RefSeq), at 1,641,007 to 1,644,060 _1346 DvMF_1347: DvMF_1347 - 7-cyano-7-deazaguanine reductase (RefSeq), at 1,644,245 to 1,644,811 _1347 DvMF_1348: DvMF_1348 - Organic solvent tolerance protein (RefSeq), at 1,645,096 to 1,647,441 _1348 Position (kb) 1644 1645Strain fitness (log2 ratio) -1 0 1at 1643.276 kb on - strand, within DvMF_1346at 1643.370 kb on + strand, within DvMF_1346at 1643.445 kb on - strand, within DvMF_1346at 1643.450 kb on + strand, within DvMF_1346at 1643.472 kb on + strand, within DvMF_1346at 1643.741 kb on + strand, within DvMF_1346at 1643.749 kb on - strand, within DvMF_1346at 1643.749 kb on - strand, within DvMF_1346at 1643.756 kb on + strandat 1643.764 kb on - strandat 1643.764 kb on - strandat 1644.095 kb on + strandat 1644.167 kb on + strandat 1644.436 kb on + strand, within DvMF_1347at 1644.615 kb on + strand, within DvMF_1347at 1644.880 kb on + strandat 1644.918 kb on - strandat 1644.971 kb on + strandat 1644.972 kb on - strandat 1644.979 kb on - strandat 1644.979 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Threonine as nutrient
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1,643,276 - DvMF_1346 0.74 +0.4
1,643,370 + DvMF_1346 0.77 +0.7
1,643,445 - DvMF_1346 0.80 +0.4
1,643,450 + DvMF_1346 0.80 +0.2
1,643,472 + DvMF_1346 0.81 +0.1
1,643,741 + DvMF_1346 0.90 -0.0
1,643,749 - DvMF_1346 0.90 +0.1
1,643,749 - DvMF_1346 0.90 -0.2
1,643,756 + +0.5
1,643,764 - -0.0
1,643,764 - +0.6
1,644,095 + +0.6
1,644,167 + -0.0
1,644,436 + DvMF_1347 0.34 -0.2
1,644,615 + DvMF_1347 0.65 -0.1
1,644,880 + +1.2
1,644,918 - -0.0
1,644,971 + +0.7
1,644,972 - +0.2
1,644,979 - +0.7
1,644,979 - +0.7

Or see this region's nucleotide sequence