Experiment: MoLS4 without vitamins with Casaminos 0.05%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flrA and DVU0570 overlap by 4 nucleotides DVU0570 and ald are separated by 205 nucleotides ald and DVU0572 are separated by 406 nucleotides
DVU0569: flrA - sigma-54 dependent transcriptional regulator (TIGR), at 634,415 to 635,995
flrA
DVU0570: DVU0570 - hypothetical protein (TIGR), at 635,992 to 636,168
DVU0570
DVU0571: ald - alanine dehydrogenase (TIGR), at 636,374 to 637,486
ald
DVU0572: DVU0572 - hypothetical protein (TIGR), at 637,893 to 638,231
DVU0572
Position (kb) 636
637
638 Strain fitness (log2 ratio) -2
-1
0
1
2 at 635.440 kb on - strand, within flrA at 635.479 kb on + strand, within flrA at 635.518 kb on - strand, within flrA at 635.549 kb on - strand, within flrA at 635.553 kb on - strand, within flrA at 635.571 kb on + strand, within flrA at 635.631 kb on - strand, within flrA at 635.702 kb on + strand, within flrA at 635.775 kb on + strand, within flrA at 635.783 kb on - strand, within flrA at 635.785 kb on + strand, within flrA at 635.817 kb on + strand, within flrA at 635.836 kb on - strand, within flrA at 635.841 kb on - strand at 636.258 kb on + strand at 636.266 kb on - strand at 636.294 kb on + strand at 636.307 kb on + strand at 636.438 kb on + strand at 636.446 kb on - strand at 636.470 kb on + strand at 636.475 kb on + strand at 636.483 kb on - strand at 636.494 kb on - strand, within ald at 636.692 kb on + strand, within ald at 636.692 kb on + strand, within ald at 636.692 kb on + strand, within ald at 636.692 kb on + strand, within ald at 636.731 kb on + strand, within ald at 636.764 kb on + strand, within ald at 636.805 kb on - strand, within ald at 636.867 kb on + strand, within ald at 636.952 kb on + strand, within ald at 637.143 kb on - strand, within ald at 637.143 kb on - strand, within ald at 637.163 kb on - strand, within ald at 637.253 kb on + strand, within ald at 637.261 kb on - strand, within ald at 637.288 kb on + strand, within ald at 637.289 kb on + strand, within ald at 637.295 kb on + strand, within ald at 637.302 kb on + strand, within ald at 637.302 kb on + strand, within ald at 637.310 kb on - strand, within ald at 637.310 kb on - strand, within ald at 637.312 kb on + strand, within ald at 637.320 kb on - strand, within ald at 637.327 kb on + strand, within ald at 637.327 kb on + strand, within ald at 637.335 kb on - strand, within ald at 637.355 kb on + strand, within ald at 637.480 kb on + strand at 637.504 kb on - strand at 637.588 kb on - strand at 637.614 kb on + strand at 637.641 kb on - strand at 637.939 kb on + strand, within DVU0572 at 637.939 kb on + strand, within DVU0572 at 637.944 kb on + strand, within DVU0572 at 637.973 kb on - strand, within DVU0572 at 638.099 kb on - strand, within DVU0572 at 638.156 kb on + strand, within DVU0572 at 638.164 kb on - strand, within DVU0572 at 638.178 kb on + strand, within DVU0572 at 638.180 kb on + strand, within DVU0572 at 638.184 kb on - strand, within DVU0572 at 638.184 kb on - strand, within DVU0572 at 638.207 kb on - strand at 638.247 kb on + strand at 638.275 kb on - strand at 638.282 kb on - strand at 638.309 kb on + strand at 638.316 kb on + strand at 638.324 kb on - strand at 638.335 kb on + strand at 638.471 kb on + strand at 638.480 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.05% remove 635,440 - flrA DVU0569 0.65 +0.9 635,479 + flrA DVU0569 0.67 +0.1 635,518 - flrA DVU0569 0.70 -0.5 635,549 - flrA DVU0569 0.72 -2.5 635,553 - flrA DVU0569 0.72 -0.5 635,571 + flrA DVU0569 0.73 +0.6 635,631 - flrA DVU0569 0.77 -0.1 635,702 + flrA DVU0569 0.81 -1.3 635,775 + flrA DVU0569 0.86 -0.1 635,783 - flrA DVU0569 0.87 -0.3 635,785 + flrA DVU0569 0.87 -0.4 635,817 + flrA DVU0569 0.89 +0.5 635,836 - flrA DVU0569 0.90 -0.2 635,841 - -1.5 636,258 + -0.5 636,266 - -0.0 636,294 + -0.3 636,307 + +0.3 636,438 + +2.5 636,446 - -0.7 636,470 + -0.1 636,475 + +0.9 636,483 - -0.8 636,494 - ald DVU0571 0.11 -0.5 636,692 + ald DVU0571 0.29 +0.9 636,692 + ald DVU0571 0.29 -0.1 636,692 + ald DVU0571 0.29 -1.4 636,692 + ald DVU0571 0.29 +0.3 636,731 + ald DVU0571 0.32 -0.3 636,764 + ald DVU0571 0.35 -0.7 636,805 - ald DVU0571 0.39 +0.1 636,867 + ald DVU0571 0.44 +0.3 636,952 + ald DVU0571 0.52 +0.3 637,143 - ald DVU0571 0.69 -1.4 637,143 - ald DVU0571 0.69 -1.1 637,163 - ald DVU0571 0.71 +0.9 637,253 + ald DVU0571 0.79 -0.7 637,261 - ald DVU0571 0.80 -0.0 637,288 + ald DVU0571 0.82 -0.3 637,289 + ald DVU0571 0.82 -1.5 637,295 + ald DVU0571 0.83 +0.9 637,302 + ald DVU0571 0.83 -1.2 637,302 + ald DVU0571 0.83 -1.4 637,310 - ald DVU0571 0.84 +0.9 637,310 - ald DVU0571 0.84 -0.4 637,312 + ald DVU0571 0.84 -0.6 637,320 - ald DVU0571 0.85 -1.1 637,327 + ald DVU0571 0.86 +0.3 637,327 + ald DVU0571 0.86 -0.0 637,335 - ald DVU0571 0.86 -1.4 637,355 + ald DVU0571 0.88 +1.1 637,480 + +0.1 637,504 - -1.4 637,588 - +0.6 637,614 + +0.7 637,641 - -0.1 637,939 + DVU0572 0.14 +1.2 637,939 + DVU0572 0.14 -1.1 637,944 + DVU0572 0.15 -0.1 637,973 - DVU0572 0.24 +0.0 638,099 - DVU0572 0.61 -1.0 638,156 + DVU0572 0.78 -1.1 638,164 - DVU0572 0.80 +0.6 638,178 + DVU0572 0.84 -0.3 638,180 + DVU0572 0.85 -0.1 638,184 - DVU0572 0.86 -0.1 638,184 - DVU0572 0.86 -0.3 638,207 - -0.5 638,247 + +0.9 638,275 - +1.7 638,282 - -0.5 638,309 + -0.8 638,316 + -0.2 638,324 - -0.5 638,335 + -0.6 638,471 + -0.7 638,480 - -0.5
Or see this region's nucleotide sequence