Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0049

Experiment: MoLS4 without vitamins with Casaminos 0.05%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU0047 and DVU0048 are separated by 20 nucleotidesDVU0048 and DVU0049 overlap by 4 nucleotidesDVU0049 and motA-1 are separated by 11 nucleotides DVU0047: DVU0047 - flagellar protein FliL (TIGR), at 52,628 to 53,143 DVU0047 DVU0048: DVU0048 - chemotaxis protein MotB (TIGR), at 53,164 to 53,904 DVU0048 DVU0049: DVU0049 - OmpA family protein (TIGR), at 53,901 to 54,995 DVU0049 DVU0050: motA-1 - chemotaxis protein MotA (TIGR), at 55,007 to 55,765 motA-1 Position (kb) 53 54 55Strain fitness (log2 ratio) -2 -1 0 1 2at 52.939 kb on - strand, within DVU0047at 53.014 kb on - strand, within DVU0047at 53.130 kb on + strandat 53.151 kb on + strandat 53.154 kb on - strandat 53.192 kb on + strandat 53.281 kb on + strand, within DVU0048at 53.282 kb on + strand, within DVU0048at 53.290 kb on - strand, within DVU0048at 53.307 kb on - strand, within DVU0048at 53.374 kb on + strand, within DVU0048at 53.410 kb on - strand, within DVU0048at 53.410 kb on - strand, within DVU0048at 53.430 kb on + strand, within DVU0048at 53.487 kb on - strand, within DVU0048at 53.570 kb on - strand, within DVU0048at 53.570 kb on - strand, within DVU0048at 53.574 kb on + strand, within DVU0048at 53.580 kb on + strand, within DVU0048at 53.583 kb on - strand, within DVU0048at 53.595 kb on - strand, within DVU0048at 53.596 kb on - strand, within DVU0048at 53.603 kb on + strand, within DVU0048at 53.603 kb on + strand, within DVU0048at 53.644 kb on + strand, within DVU0048at 53.662 kb on - strand, within DVU0048at 53.700 kb on + strand, within DVU0048at 53.708 kb on - strand, within DVU0048at 53.708 kb on - strand, within DVU0048at 53.767 kb on + strand, within DVU0048at 53.777 kb on - strand, within DVU0048at 53.850 kb on + strandat 53.858 kb on - strandat 53.953 kb on - strandat 53.953 kb on - strandat 53.953 kb on - strandat 53.962 kb on + strandat 53.965 kb on - strandat 54.105 kb on - strand, within DVU0049at 54.274 kb on + strand, within DVU0049at 54.282 kb on - strand, within DVU0049at 54.290 kb on + strand, within DVU0049at 54.456 kb on + strand, within DVU0049at 54.464 kb on - strand, within DVU0049at 54.482 kb on + strand, within DVU0049at 54.503 kb on - strand, within DVU0049at 54.514 kb on + strand, within DVU0049at 54.543 kb on + strand, within DVU0049at 54.553 kb on - strand, within DVU0049at 54.563 kb on - strand, within DVU0049at 54.566 kb on + strand, within DVU0049at 54.596 kb on + strand, within DVU0049at 54.605 kb on + strand, within DVU0049at 54.614 kb on + strand, within DVU0049at 54.624 kb on + strand, within DVU0049at 54.646 kb on + strand, within DVU0049at 54.677 kb on + strand, within DVU0049at 54.685 kb on + strand, within DVU0049at 54.685 kb on + strand, within DVU0049at 54.693 kb on - strand, within DVU0049at 54.693 kb on - strand, within DVU0049at 54.707 kb on + strand, within DVU0049at 54.712 kb on + strand, within DVU0049at 54.730 kb on - strand, within DVU0049at 54.778 kb on - strand, within DVU0049at 54.809 kb on + strand, within DVU0049at 54.809 kb on + strand, within DVU0049at 54.817 kb on - strand, within DVU0049at 54.997 kb on - strandat 54.999 kb on + strandat 55.038 kb on + strandat 55.041 kb on - strandat 55.118 kb on + strand, within motA-1at 55.189 kb on - strand, within motA-1at 55.203 kb on - strand, within motA-1at 55.228 kb on - strand, within motA-1at 55.257 kb on + strand, within motA-1at 55.309 kb on + strand, within motA-1at 55.309 kb on + strand, within motA-1at 55.317 kb on - strand, within motA-1at 55.372 kb on + strand, within motA-1at 55.382 kb on + strand, within motA-1at 55.390 kb on - strand, within motA-1at 55.408 kb on + strand, within motA-1at 55.408 kb on + strand, within motA-1at 55.408 kb on + strand, within motA-1at 55.416 kb on - strand, within motA-1at 55.416 kb on - strand, within motA-1at 55.540 kb on + strand, within motA-1at 55.540 kb on - strand, within motA-1at 55.548 kb on - strand, within motA-1at 55.561 kb on - strand, within motA-1at 55.661 kb on - strand, within motA-1at 55.665 kb on + strand, within motA-1at 55.665 kb on + strand, within motA-1at 55.685 kb on - strand, within motA-1at 55.723 kb on + strandat 55.723 kb on + strandat 55.735 kb on - strandat 55.768 kb on - strandat 55.768 kb on - strandat 55.781 kb on - strandat 55.841 kb on - strandat 55.843 kb on + strandat 55.843 kb on + strandat 55.851 kb on - strandat 55.851 kb on - strandat 55.851 kb on - strandat 55.883 kb on + strandat 55.901 kb on - strandat 55.910 kb on - strandat 55.925 kb on - strandat 55.935 kb on + strandat 55.967 kb on - strandat 55.980 kb on + strandat 55.980 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.05%
remove
52,939 - DVU0047 0.60 +0.4
53,014 - DVU0047 0.75 +0.6
53,130 + +0.6
53,151 + -0.9
53,154 - -0.2
53,192 + +1.5
53,281 + DVU0048 0.16 +2.4
53,282 + DVU0048 0.16 +0.6
53,290 - DVU0048 0.17 +0.7
53,307 - DVU0048 0.19 -1.2
53,374 + DVU0048 0.28 +0.2
53,410 - DVU0048 0.33 -0.2
53,410 - DVU0048 0.33 +1.4
53,430 + DVU0048 0.36 -0.1
53,487 - DVU0048 0.44 +0.8
53,570 - DVU0048 0.55 +1.5
53,570 - DVU0048 0.55 +0.2
53,574 + DVU0048 0.55 -0.1
53,580 + DVU0048 0.56 -0.5
53,583 - DVU0048 0.57 -0.0
53,595 - DVU0048 0.58 -0.0
53,596 - DVU0048 0.58 -0.6
53,603 + DVU0048 0.59 +0.6
53,603 + DVU0048 0.59 +0.2
53,644 + DVU0048 0.65 -0.8
53,662 - DVU0048 0.67 +0.8
53,700 + DVU0048 0.72 +0.8
53,708 - DVU0048 0.73 -1.2
53,708 - DVU0048 0.73 -1.0
53,767 + DVU0048 0.81 +0.1
53,777 - DVU0048 0.83 -0.4
53,850 + -0.2
53,858 - +0.8
53,953 - +0.4
53,953 - +0.7
53,953 - +0.3
53,962 + -1.2
53,965 - +0.5
54,105 - DVU0049 0.19 +1.8
54,274 + DVU0049 0.34 +0.3
54,282 - DVU0049 0.35 +0.3
54,290 + DVU0049 0.36 +0.2
54,456 + DVU0049 0.51 +0.2
54,464 - DVU0049 0.51 +0.3
54,482 + DVU0049 0.53 +0.1
54,503 - DVU0049 0.55 +0.8
54,514 + DVU0049 0.56 -0.3
54,543 + DVU0049 0.59 +0.3
54,553 - DVU0049 0.60 +0.2
54,563 - DVU0049 0.60 -1.8
54,566 + DVU0049 0.61 -0.0
54,596 + DVU0049 0.63 -0.3
54,605 + DVU0049 0.64 +0.1
54,614 + DVU0049 0.65 +0.2
54,624 + DVU0049 0.66 -2.2
54,646 + DVU0049 0.68 -0.4
54,677 + DVU0049 0.71 -0.2
54,685 + DVU0049 0.72 -0.8
54,685 + DVU0049 0.72 +0.1
54,693 - DVU0049 0.72 -0.5
54,693 - DVU0049 0.72 +0.4
54,707 + DVU0049 0.74 -0.1
54,712 + DVU0049 0.74 -0.1
54,730 - DVU0049 0.76 -0.4
54,778 - DVU0049 0.80 -0.6
54,809 + DVU0049 0.83 +0.1
54,809 + DVU0049 0.83 +0.4
54,817 - DVU0049 0.84 +0.8
54,997 - -0.4
54,999 + -0.0
55,038 + -0.0
55,041 - -0.2
55,118 + motA-1 DVU0050 0.15 -0.5
55,189 - motA-1 DVU0050 0.24 -1.5
55,203 - motA-1 DVU0050 0.26 +0.2
55,228 - motA-1 DVU0050 0.29 -0.5
55,257 + motA-1 DVU0050 0.33 +1.2
55,309 + motA-1 DVU0050 0.40 -0.4
55,309 + motA-1 DVU0050 0.40 +0.2
55,317 - motA-1 DVU0050 0.41 -0.2
55,372 + motA-1 DVU0050 0.48 -0.2
55,382 + motA-1 DVU0050 0.49 -0.6
55,390 - motA-1 DVU0050 0.50 +0.2
55,408 + motA-1 DVU0050 0.53 -0.8
55,408 + motA-1 DVU0050 0.53 -1.3
55,408 + motA-1 DVU0050 0.53 -1.1
55,416 - motA-1 DVU0050 0.54 -0.8
55,416 - motA-1 DVU0050 0.54 -0.1
55,540 + motA-1 DVU0050 0.70 +0.8
55,540 - motA-1 DVU0050 0.70 -0.4
55,548 - motA-1 DVU0050 0.71 -0.8
55,561 - motA-1 DVU0050 0.73 +0.8
55,661 - motA-1 DVU0050 0.86 -0.3
55,665 + motA-1 DVU0050 0.87 +0.5
55,665 + motA-1 DVU0050 0.87 +0.8
55,685 - motA-1 DVU0050 0.89 +0.0
55,723 + -0.8
55,723 + +0.4
55,735 - +0.2
55,768 - -0.1
55,768 - +0.1
55,781 - -1.2
55,841 - +0.6
55,843 + -1.6
55,843 + -1.5
55,851 - -0.3
55,851 - -0.2
55,851 - -0.4
55,883 + -0.8
55,901 - -0.8
55,910 - -0.2
55,925 - -0.8
55,935 + -0.0
55,967 - +0.0
55,980 + -0.0
55,980 + +0.3

Or see this region's nucleotide sequence