Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1638

Experiment: MoLS4 without vitamins with Casaminos 0.05%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntppaC and DVU1638 are separated by 670 nucleotidesDVU1638 and DVU1639 are separated by 142 nucleotides DVU1636: ppaC - inorganic pyrophosphatase, manganese-dependent (TIGR), at 1,717,621 to 1,718,541 ppaC DVU1638: DVU1638 - conserved domain protein (TIGR), at 1,719,212 to 1,719,808 DVU1638 DVU1639: DVU1639 - conserved domain protein (TIGR), at 1,719,951 to 1,720,946 DVU1639 Position (kb) 1719 1720Strain fitness (log2 ratio) -1 0 1 2at 1718.591 kb on + strandat 1718.666 kb on + strandat 1718.842 kb on + strandat 1718.850 kb on - strandat 1719.031 kb on + strandat 1719.058 kb on - strandat 1719.831 kb on - strandat 1720.050 kb on - strandat 1720.073 kb on + strand, within DVU1639at 1720.123 kb on - strand, within DVU1639at 1720.129 kb on - strand, within DVU1639at 1720.181 kb on + strand, within DVU1639at 1720.245 kb on - strand, within DVU1639at 1720.253 kb on - strand, within DVU1639at 1720.303 kb on + strand, within DVU1639at 1720.311 kb on - strand, within DVU1639at 1720.334 kb on - strand, within DVU1639at 1720.596 kb on + strand, within DVU1639at 1720.599 kb on - strand, within DVU1639at 1720.604 kb on - strand, within DVU1639at 1720.757 kb on - strand, within DVU1639at 1720.757 kb on - strand, within DVU1639

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.05%
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1,718,591 + +0.1
1,718,666 + +2.0
1,718,842 + +0.7
1,718,850 - -0.1
1,719,031 + -0.2
1,719,058 - -0.6
1,719,831 - +0.1
1,720,050 - -0.2
1,720,073 + DVU1639 0.12 +2.0
1,720,123 - DVU1639 0.17 +0.3
1,720,129 - DVU1639 0.18 +0.4
1,720,181 + DVU1639 0.23 +0.4
1,720,245 - DVU1639 0.30 +0.0
1,720,253 - DVU1639 0.30 -0.1
1,720,303 + DVU1639 0.35 -0.3
1,720,311 - DVU1639 0.36 +0.7
1,720,334 - DVU1639 0.38 +0.4
1,720,596 + DVU1639 0.65 +0.6
1,720,599 - DVU1639 0.65 +0.4
1,720,604 - DVU1639 0.66 -0.4
1,720,757 - DVU1639 0.81 -0.2
1,720,757 - DVU1639 0.81 -0.2

Or see this region's nucleotide sequence