Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0955

Experiment: MoLS4 without vitamins with Casaminos 0.05%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU0954 and alr are separated by 186 nucleotidesalr and rpsF are separated by 137 nucleotidesrpsF and rpsR are separated by 0 nucleotidesrpsR and rplI are separated by 12 nucleotides DVU0954: DVU0954 - organic solvent tolerance protein, putative (TIGR), at 1,047,731 to 1,050,025 DVU0954 DVU0955: alr - alanine racemase (TIGR), at 1,050,212 to 1,051,342 alr DVU0956: rpsF - ribosomal protein S6 (TIGR), at 1,051,480 to 1,051,785 rpsF DVU0957: rpsR - ribosomal protein S18 (TIGR), at 1,051,786 to 1,052,049 rpsR DVU0958: rplI - ribosomal protein L9 (TIGR), at 1,052,062 to 1,052,565 rplI Position (kb) 1050 1051 1052Strain fitness (log2 ratio) -2 -1 0 1at 1051.310 kb on + strandat 1051.328 kb on - strandat 1051.353 kb on - strandat 1051.433 kb on - strandat 1051.456 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.05%
remove
1,051,310 + -1.9
1,051,328 - -0.6
1,051,353 - +0.2
1,051,433 - +1.0
1,051,456 + -0.2

Or see this region's nucleotide sequence