Experiment: MoLS4 without vitamins with Casaminos 0.05%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dxr and DVU0867 overlap by 4 nucleotides DVU0867 and cdsA are separated by 8 nucleotides cdsA and uppS overlap by 4 nucleotides
DVU0866: dxr - 1-deoxy-D-xylulose 5-phosphate reductoisomerase (TIGR), at 958,392 to 959,618
dxr
DVU0867: DVU0867 - aromatic amino acid decarboxylase, putative (TIGR), at 959,615 to 961,108
DVU0867
DVU0868: cdsA - phosphatidate cytidylyltransferase (TIGR), at 961,117 to 961,923
cdsA
DVU0869: uppS - undecaprenyl diphosphate synthase (TIGR), at 961,920 to 962,663
uppS
Position (kb) 959
960
961
962 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 959.808 kb on + strand, within DVU0867 at 959.929 kb on - strand, within DVU0867 at 960.096 kb on + strand, within DVU0867 at 960.125 kb on + strand, within DVU0867 at 960.243 kb on - strand, within DVU0867 at 960.269 kb on + strand, within DVU0867 at 960.277 kb on - strand, within DVU0867 at 960.293 kb on + strand, within DVU0867 at 960.368 kb on - strand, within DVU0867 at 960.378 kb on + strand, within DVU0867 at 960.386 kb on - strand, within DVU0867 at 960.386 kb on - strand, within DVU0867 at 960.386 kb on - strand, within DVU0867 at 960.446 kb on + strand, within DVU0867 at 960.721 kb on + strand, within DVU0867 at 960.738 kb on - strand, within DVU0867 at 960.780 kb on + strand, within DVU0867 at 960.783 kb on - strand, within DVU0867 at 960.819 kb on - strand, within DVU0867
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without vitamins with Casaminos 0.05% remove 959,808 + DVU0867 0.13 -1.7 959,929 - DVU0867 0.21 -2.3 960,096 + DVU0867 0.32 -1.9 960,125 + DVU0867 0.34 -1.8 960,243 - DVU0867 0.42 -2.1 960,269 + DVU0867 0.44 -1.1 960,277 - DVU0867 0.44 -3.0 960,293 + DVU0867 0.45 -1.3 960,368 - DVU0867 0.50 -2.3 960,378 + DVU0867 0.51 -1.3 960,386 - DVU0867 0.52 -2.9 960,386 - DVU0867 0.52 -1.9 960,386 - DVU0867 0.52 -0.4 960,446 + DVU0867 0.56 -1.6 960,721 + DVU0867 0.74 -1.8 960,738 - DVU0867 0.75 -2.2 960,780 + DVU0867 0.78 -1.8 960,783 - DVU0867 0.78 -1.8 960,819 - DVU0867 0.81 -1.8
Or see this region's nucleotide sequence