Experiment: formate McAA p-aminobenzoic dropout
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03900 and MMP_RS03905 are separated by 19 nucleotides MMP_RS03905 and MMP_RS03910 are separated by 56 nucleotides MMP_RS03910 and MMP_RS03915 are separated by 107 nucleotides MMP_RS03915 and MMP_RS03920 are separated by 177 nucleotides
MMP_RS03900: MMP_RS03900 - minichromosome maintenance protein MCM, at 739,441 to 741,447
_RS03900
MMP_RS03905: MMP_RS03905 - hypothetical protein, at 741,467 to 741,994
_RS03905
MMP_RS03910: MMP_RS03910 - hypothetical protein, at 742,051 to 742,263
_RS03910
MMP_RS03915: MMP_RS03915 - DUF2080 family transposase-associated protein, at 742,371 to 742,568
_RS03915
MMP_RS03920: MMP_RS03920 - transcriptional regulator, at 742,746 to 743,045
_RS03920
Position (kb) 742
743 Strain fitness (log2 ratio) -1
0
1 at 741.300 kb on + strand at 741.320 kb on - strand at 741.453 kb on + strand at 741.469 kb on + strand at 742.117 kb on - strand, within MMP_RS03910 at 742.225 kb on + strand, within MMP_RS03910 at 742.249 kb on - strand at 742.349 kb on + strand at 742.568 kb on - strand at 742.568 kb on - strand at 742.573 kb on - strand at 742.574 kb on + strand at 742.574 kb on + strand at 742.615 kb on - strand at 742.697 kb on - strand at 742.698 kb on + strand at 742.714 kb on - strand at 743.133 kb on - strand at 743.133 kb on - strand at 743.211 kb on - strand at 743.227 kb on - strand at 743.227 kb on - strand at 743.227 kb on - strand at 743.228 kb on + strand at 743.254 kb on - strand at 743.259 kb on - strand at 743.260 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction formate McAA p-aminobenzoic dropout remove 741,300 + -0.4 741,320 - +0.2 741,453 + +0.3 741,469 + +0.0 742,117 - MMP_RS03910 0.31 +0.1 742,225 + MMP_RS03910 0.82 +0.6 742,249 - +0.3 742,349 + -0.2 742,568 - +0.1 742,568 - -0.7 742,573 - -0.2 742,574 + -1.1 742,574 + +0.5 742,615 - -0.1 742,697 - -0.2 742,698 + -0.6 742,714 - -0.4 743,133 - -0.0 743,133 - -0.3 743,211 - +0.5 743,227 - +0.1 743,227 - +0.3 743,227 - -0.4 743,228 + +0.1 743,254 - +0.9 743,259 - +0.2 743,260 + -0.5
Or see this region's nucleotide sequence