Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09130 and PGA1_c09140 overlap by 4 nucleotides PGA1_c09140 and PGA1_c09150 overlap by 4 nucleotides
PGA1_c09130: PGA1_c09130 - 8-amino-7-oxononanoate synthase BioF, at 938,722 to 939,861
_c09130
PGA1_c09140: PGA1_c09140 - dethiobiotin synthetase BioD, at 939,858 to 940,499
_c09140
PGA1_c09150: PGA1_c09150 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase BioA, at 940,496 to 941,794
_c09150
Position (kb) 939
940
941 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 938.901 kb on - strand, within PGA1_c09130 at 938.997 kb on + strand, within PGA1_c09130 at 938.997 kb on + strand, within PGA1_c09130 at 938.997 kb on + strand, within PGA1_c09130 at 938.997 kb on + strand, within PGA1_c09130 at 938.997 kb on + strand, within PGA1_c09130 at 939.005 kb on - strand, within PGA1_c09130 at 939.005 kb on - strand, within PGA1_c09130 at 939.005 kb on - strand, within PGA1_c09130 at 939.081 kb on + strand, within PGA1_c09130 at 939.084 kb on - strand, within PGA1_c09130 at 939.207 kb on + strand, within PGA1_c09130 at 939.207 kb on + strand, within PGA1_c09130 at 939.207 kb on + strand, within PGA1_c09130 at 939.233 kb on + strand, within PGA1_c09130 at 939.323 kb on + strand, within PGA1_c09130 at 939.353 kb on + strand, within PGA1_c09130 at 939.357 kb on + strand, within PGA1_c09130 at 939.365 kb on + strand, within PGA1_c09130 at 939.401 kb on + strand, within PGA1_c09130 at 939.412 kb on + strand, within PGA1_c09130 at 939.430 kb on + strand, within PGA1_c09130 at 939.476 kb on - strand, within PGA1_c09130 at 939.493 kb on - strand, within PGA1_c09130 at 939.528 kb on + strand, within PGA1_c09130 at 939.533 kb on + strand, within PGA1_c09130 at 939.541 kb on - strand, within PGA1_c09130 at 939.604 kb on - strand, within PGA1_c09130 at 939.634 kb on + strand, within PGA1_c09130 at 939.646 kb on + strand, within PGA1_c09130 at 939.661 kb on + strand, within PGA1_c09130 at 939.696 kb on + strand, within PGA1_c09130 at 939.696 kb on + strand, within PGA1_c09130 at 939.696 kb on + strand, within PGA1_c09130 at 939.696 kb on + strand, within PGA1_c09130 at 939.696 kb on + strand, within PGA1_c09130 at 939.704 kb on - strand, within PGA1_c09130 at 939.719 kb on + strand, within PGA1_c09130 at 939.727 kb on - strand, within PGA1_c09130 at 939.807 kb on + strand at 939.807 kb on + strand at 939.812 kb on + strand at 939.815 kb on - strand at 939.820 kb on - strand at 939.829 kb on + strand at 939.945 kb on - strand, within PGA1_c09140 at 939.997 kb on + strand, within PGA1_c09140 at 940.023 kb on - strand, within PGA1_c09140 at 940.033 kb on - strand, within PGA1_c09140 at 940.084 kb on - strand, within PGA1_c09140 at 940.156 kb on + strand, within PGA1_c09140 at 940.252 kb on + strand, within PGA1_c09140 at 940.300 kb on + strand, within PGA1_c09140 at 940.308 kb on - strand, within PGA1_c09140 at 940.311 kb on + strand, within PGA1_c09140 at 940.362 kb on - strand, within PGA1_c09140 at 940.458 kb on + strand at 940.486 kb on - strand at 940.486 kb on - strand at 940.511 kb on - strand at 940.549 kb on + strand at 940.549 kb on + strand at 940.549 kb on + strand at 940.557 kb on - strand at 940.557 kb on - strand at 940.557 kb on - strand at 940.621 kb on + strand at 940.657 kb on - strand, within PGA1_c09150 at 940.725 kb on - strand, within PGA1_c09150 at 940.730 kb on - strand, within PGA1_c09150 at 940.921 kb on - strand, within PGA1_c09150 at 941.007 kb on - strand, within PGA1_c09150 at 941.007 kb on - strand, within PGA1_c09150 at 941.125 kb on + strand, within PGA1_c09150 at 941.125 kb on + strand, within PGA1_c09150 at 941.159 kb on + strand, within PGA1_c09150 at 941.159 kb on + strand, within PGA1_c09150 at 941.164 kb on + strand, within PGA1_c09150 at 941.410 kb on - strand, within PGA1_c09150 at 941.427 kb on + strand, within PGA1_c09150 at 941.472 kb on - strand, within PGA1_c09150 at 941.482 kb on + strand, within PGA1_c09150 at 941.484 kb on - strand, within PGA1_c09150
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 938,901 - PGA1_c09130 0.16 -1.1 938,997 + PGA1_c09130 0.24 +0.3 938,997 + PGA1_c09130 0.24 -0.6 938,997 + PGA1_c09130 0.24 -0.8 938,997 + PGA1_c09130 0.24 +0.8 938,997 + PGA1_c09130 0.24 -1.7 939,005 - PGA1_c09130 0.25 +0.0 939,005 - PGA1_c09130 0.25 -0.3 939,005 - PGA1_c09130 0.25 +0.6 939,081 + PGA1_c09130 0.31 +0.1 939,084 - PGA1_c09130 0.32 -0.9 939,207 + PGA1_c09130 0.43 -0.7 939,207 + PGA1_c09130 0.43 -2.7 939,207 + PGA1_c09130 0.43 -0.2 939,233 + PGA1_c09130 0.45 -0.7 939,323 + PGA1_c09130 0.53 -1.1 939,353 + PGA1_c09130 0.55 -0.5 939,357 + PGA1_c09130 0.56 -1.7 939,365 + PGA1_c09130 0.56 -0.0 939,401 + PGA1_c09130 0.60 +1.6 939,412 + PGA1_c09130 0.61 -2.6 939,430 + PGA1_c09130 0.62 -0.5 939,476 - PGA1_c09130 0.66 +0.3 939,493 - PGA1_c09130 0.68 +0.2 939,528 + PGA1_c09130 0.71 -0.8 939,533 + PGA1_c09130 0.71 -0.3 939,541 - PGA1_c09130 0.72 +0.4 939,604 - PGA1_c09130 0.77 +0.0 939,634 + PGA1_c09130 0.80 +1.0 939,646 + PGA1_c09130 0.81 +1.1 939,661 + PGA1_c09130 0.82 -1.3 939,696 + PGA1_c09130 0.85 -0.4 939,696 + PGA1_c09130 0.85 -0.4 939,696 + PGA1_c09130 0.85 -1.4 939,696 + PGA1_c09130 0.85 -1.0 939,696 + PGA1_c09130 0.85 -1.7 939,704 - PGA1_c09130 0.86 -1.5 939,719 + PGA1_c09130 0.87 -1.7 939,727 - PGA1_c09130 0.88 +0.9 939,807 + +0.4 939,807 + -1.0 939,812 + -0.6 939,815 - -1.0 939,820 - +0.5 939,829 + -1.6 939,945 - PGA1_c09140 0.14 -0.2 939,997 + PGA1_c09140 0.22 -0.7 940,023 - PGA1_c09140 0.26 +1.0 940,033 - PGA1_c09140 0.27 -0.2 940,084 - PGA1_c09140 0.35 +2.7 940,156 + PGA1_c09140 0.46 -0.6 940,252 + PGA1_c09140 0.61 +0.7 940,300 + PGA1_c09140 0.69 +0.5 940,308 - PGA1_c09140 0.70 +0.6 940,311 + PGA1_c09140 0.71 +1.9 940,362 - PGA1_c09140 0.79 +0.5 940,458 + -0.4 940,486 - -0.1 940,486 - +0.7 940,511 - +1.7 940,549 + -1.5 940,549 + -0.4 940,549 + +0.1 940,557 - -1.1 940,557 - +0.2 940,557 - +0.2 940,621 + -1.4 940,657 - PGA1_c09150 0.12 -0.5 940,725 - PGA1_c09150 0.18 -1.0 940,730 - PGA1_c09150 0.18 -0.3 940,921 - PGA1_c09150 0.33 +0.9 941,007 - PGA1_c09150 0.39 -3.1 941,007 - PGA1_c09150 0.39 +1.4 941,125 + PGA1_c09150 0.48 -0.2 941,125 + PGA1_c09150 0.48 +0.9 941,159 + PGA1_c09150 0.51 -0.9 941,159 + PGA1_c09150 0.51 +1.0 941,164 + PGA1_c09150 0.51 +1.4 941,410 - PGA1_c09150 0.70 +0.6 941,427 + PGA1_c09150 0.72 +0.5 941,472 - PGA1_c09150 0.75 -1.5 941,482 + PGA1_c09150 0.76 +1.0 941,484 - PGA1_c09150 0.76 +0.1
Or see this region's nucleotide sequence