Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08680

Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08660 and PGA1_c08670 are separated by 97 nucleotidesPGA1_c08670 and PGA1_c08680 are separated by 79 nucleotidesPGA1_c08680 and PGA1_c08690 are separated by 234 nucleotidesPGA1_c08690 and PGA1_c08700 are separated by 74 nucleotides PGA1_c08660: PGA1_c08660 - hypothetical protein, at 893,991 to 894,320 _c08660 PGA1_c08670: PGA1_c08670 - transcriptional regulator, TetR family, at 894,418 to 895,035 _c08670 PGA1_c08680: PGA1_c08680 - pirin-like protein, at 895,115 to 896,026 _c08680 PGA1_c08690: PGA1_c08690 - hypothetical protein, at 896,261 to 896,776 _c08690 PGA1_c08700: PGA1_c08700 - hypothetical protein, at 896,851 to 897,450 _c08700 Position (kb) 895 896 897Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 894.120 kb on + strand, within PGA1_c08660at 894.128 kb on - strand, within PGA1_c08660at 894.128 kb on - strand, within PGA1_c08660at 894.295 kb on + strandat 894.295 kb on + strandat 894.295 kb on + strandat 894.295 kb on + strandat 894.295 kb on + strandat 894.295 kb on + strandat 894.295 kb on + strandat 894.295 kb on + strandat 894.295 kb on + strandat 894.295 kb on + strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.303 kb on - strandat 894.313 kb on - strandat 894.339 kb on + strandat 894.347 kb on - strandat 894.347 kb on - strandat 894.347 kb on - strandat 894.417 kb on + strandat 894.426 kb on + strandat 894.511 kb on + strand, within PGA1_c08670at 894.559 kb on + strand, within PGA1_c08670at 894.561 kb on + strand, within PGA1_c08670at 894.567 kb on + strand, within PGA1_c08670at 894.602 kb on - strand, within PGA1_c08670at 894.603 kb on + strand, within PGA1_c08670at 894.653 kb on + strand, within PGA1_c08670at 894.653 kb on + strand, within PGA1_c08670at 894.658 kb on + strand, within PGA1_c08670at 894.712 kb on + strand, within PGA1_c08670at 894.713 kb on - strand, within PGA1_c08670at 894.720 kb on - strand, within PGA1_c08670at 894.721 kb on - strand, within PGA1_c08670at 894.869 kb on + strand, within PGA1_c08670at 894.877 kb on - strand, within PGA1_c08670at 895.082 kb on - strandat 895.084 kb on - strandat 895.112 kb on + strandat 895.184 kb on - strandat 895.241 kb on - strand, within PGA1_c08680at 895.249 kb on + strand, within PGA1_c08680at 895.257 kb on - strand, within PGA1_c08680at 895.266 kb on - strand, within PGA1_c08680at 895.358 kb on + strand, within PGA1_c08680at 895.359 kb on + strand, within PGA1_c08680at 895.370 kb on - strand, within PGA1_c08680at 895.567 kb on + strand, within PGA1_c08680at 895.571 kb on + strand, within PGA1_c08680at 895.619 kb on - strand, within PGA1_c08680at 895.662 kb on + strand, within PGA1_c08680at 895.669 kb on + strand, within PGA1_c08680at 895.670 kb on - strand, within PGA1_c08680at 895.670 kb on - strand, within PGA1_c08680at 895.682 kb on + strand, within PGA1_c08680at 895.748 kb on - strand, within PGA1_c08680at 895.798 kb on + strand, within PGA1_c08680at 895.801 kb on + strand, within PGA1_c08680at 895.809 kb on - strand, within PGA1_c08680at 895.814 kb on - strand, within PGA1_c08680at 896.034 kb on - strandat 896.053 kb on - strandat 896.144 kb on + strandat 896.152 kb on - strandat 896.171 kb on + strandat 896.179 kb on - strandat 896.201 kb on - strandat 896.211 kb on - strandat 896.213 kb on + strandat 896.213 kb on + strandat 896.213 kb on + strandat 896.226 kb on + strandat 896.258 kb on - strandat 896.279 kb on - strandat 896.279 kb on - strandat 896.319 kb on - strand, within PGA1_c08690at 896.382 kb on + strand, within PGA1_c08690at 896.395 kb on - strand, within PGA1_c08690at 896.518 kb on - strand, within PGA1_c08690at 896.620 kb on + strand, within PGA1_c08690at 896.622 kb on + strand, within PGA1_c08690at 896.626 kb on - strand, within PGA1_c08690at 896.628 kb on - strand, within PGA1_c08690at 896.715 kb on - strand, within PGA1_c08690at 896.749 kb on + strandat 896.749 kb on + strandat 896.749 kb on + strandat 896.757 kb on - strandat 896.757 kb on - strandat 896.770 kb on + strandat 896.814 kb on - strandat 896.848 kb on + strandat 896.848 kb on + strandat 896.856 kb on - strandat 896.856 kb on - strandat 896.856 kb on - strandat 896.856 kb on - strandat 896.882 kb on - strandat 896.891 kb on + strandat 896.891 kb on + strandat 896.959 kb on + strand, within PGA1_c08700at 896.981 kb on - strand, within PGA1_c08700at 896.986 kb on - strand, within PGA1_c08700

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml
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894,120 + PGA1_c08660 0.39 -3.6
894,128 - PGA1_c08660 0.42 -1.4
894,128 - PGA1_c08660 0.42 -1.2
894,295 + -2.6
894,295 + -3.7
894,295 + -2.2
894,295 + -2.6
894,295 + -3.3
894,295 + -0.4
894,295 + -1.5
894,295 + -3.8
894,295 + -2.2
894,295 + -1.9
894,303 - -2.7
894,303 - -2.0
894,303 - -2.6
894,303 - -2.1
894,303 - -1.7
894,303 - -0.7
894,303 - -2.0
894,303 - -2.1
894,303 - -2.0
894,303 - -0.8
894,303 - -2.6
894,313 - -2.0
894,339 + +2.0
894,347 - -2.0
894,347 - +0.9
894,347 - +0.6
894,417 + +0.7
894,426 + -1.1
894,511 + PGA1_c08670 0.15 -0.8
894,559 + PGA1_c08670 0.23 +1.3
894,561 + PGA1_c08670 0.23 +1.0
894,567 + PGA1_c08670 0.24 +0.3
894,602 - PGA1_c08670 0.30 +0.2
894,603 + PGA1_c08670 0.30 -0.3
894,653 + PGA1_c08670 0.38 -0.7
894,653 + PGA1_c08670 0.38 +1.1
894,658 + PGA1_c08670 0.39 +1.7
894,712 + PGA1_c08670 0.48 -1.7
894,713 - PGA1_c08670 0.48 +0.8
894,720 - PGA1_c08670 0.49 +0.2
894,721 - PGA1_c08670 0.49 +0.0
894,869 + PGA1_c08670 0.73 +0.0
894,877 - PGA1_c08670 0.74 -1.2
895,082 - -0.8
895,084 - -0.4
895,112 + +0.3
895,184 - -1.3
895,241 - PGA1_c08680 0.14 +0.8
895,249 + PGA1_c08680 0.15 +1.7
895,257 - PGA1_c08680 0.16 +2.1
895,266 - PGA1_c08680 0.17 +0.9
895,358 + PGA1_c08680 0.27 -0.4
895,359 + PGA1_c08680 0.27 +0.3
895,370 - PGA1_c08680 0.28 +0.5
895,567 + PGA1_c08680 0.50 +1.7
895,571 + PGA1_c08680 0.50 -0.3
895,619 - PGA1_c08680 0.55 +0.6
895,662 + PGA1_c08680 0.60 +0.8
895,669 + PGA1_c08680 0.61 +1.0
895,670 - PGA1_c08680 0.61 -0.2
895,670 - PGA1_c08680 0.61 +0.7
895,682 + PGA1_c08680 0.62 +0.1
895,748 - PGA1_c08680 0.69 +0.3
895,798 + PGA1_c08680 0.75 -0.8
895,801 + PGA1_c08680 0.75 +0.6
895,809 - PGA1_c08680 0.76 -0.0
895,814 - PGA1_c08680 0.77 +0.6
896,034 - +0.3
896,053 - +0.7
896,144 + -0.9
896,152 - -0.2
896,171 + -0.2
896,179 - -0.1
896,201 - -0.2
896,211 - +0.3
896,213 + -0.7
896,213 + +0.4
896,213 + +1.2
896,226 + +0.6
896,258 - -0.1
896,279 - -0.2
896,279 - +1.1
896,319 - PGA1_c08690 0.11 +2.0
896,382 + PGA1_c08690 0.23 -2.2
896,395 - PGA1_c08690 0.26 -1.3
896,518 - PGA1_c08690 0.50 +0.5
896,620 + PGA1_c08690 0.70 -0.4
896,622 + PGA1_c08690 0.70 +0.2
896,626 - PGA1_c08690 0.71 -1.1
896,628 - PGA1_c08690 0.71 +0.2
896,715 - PGA1_c08690 0.88 -2.2
896,749 + -0.7
896,749 + -0.5
896,749 + -2.0
896,757 - -0.4
896,757 - -1.0
896,770 + -0.1
896,814 - -0.5
896,848 + -2.0
896,848 + -0.2
896,856 - -1.7
896,856 - -0.1
896,856 - -0.3
896,856 - +1.0
896,882 - +0.0
896,891 + -0.2
896,891 + -0.6
896,959 + PGA1_c08700 0.18 -0.5
896,981 - PGA1_c08700 0.22 -0.9
896,986 - PGA1_c08700 0.23 -0.7

Or see this region's nucleotide sequence