Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07220

Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07200 and PGA1_c07210 are separated by 12 nucleotidesPGA1_c07210 and PGA1_c07220 overlap by 7 nucleotidesPGA1_c07220 and PGA1_c07230 overlap by 4 nucleotidesPGA1_c07230 and PGA1_c07240 are separated by 12 nucleotides PGA1_c07200: PGA1_c07200 - phytanoyl-CoA dioxygenase-like protein, at 740,406 to 741,590 _c07200 PGA1_c07210: PGA1_c07210 - inositol 2-dehydrogenase IdhA, at 741,603 to 742,589 _c07210 PGA1_c07220: PGA1_c07220 - 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) (from data), at 742,583 to 743,422 _c07220 PGA1_c07230: PGA1_c07230 - 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data), at 743,419 to 744,276 _c07230 PGA1_c07240: PGA1_c07240 - 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92) (from data), at 744,289 to 745,281 _c07240 Position (kb) 742 743 744Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 741.610 kb on - strandat 741.799 kb on + strand, within PGA1_c07210at 741.823 kb on - strand, within PGA1_c07210at 741.849 kb on + strand, within PGA1_c07210at 741.857 kb on + strand, within PGA1_c07210at 741.865 kb on - strand, within PGA1_c07210at 741.865 kb on - strand, within PGA1_c07210at 741.865 kb on - strand, within PGA1_c07210at 741.865 kb on - strand, within PGA1_c07210at 741.865 kb on - strand, within PGA1_c07210at 741.865 kb on - strand, within PGA1_c07210at 741.865 kb on - strand, within PGA1_c07210at 741.901 kb on - strand, within PGA1_c07210at 741.948 kb on - strand, within PGA1_c07210at 741.961 kb on + strand, within PGA1_c07210at 741.994 kb on + strand, within PGA1_c07210at 742.114 kb on + strand, within PGA1_c07210at 742.124 kb on + strand, within PGA1_c07210at 742.127 kb on + strand, within PGA1_c07210at 742.173 kb on + strand, within PGA1_c07210at 742.230 kb on + strand, within PGA1_c07210at 742.230 kb on + strand, within PGA1_c07210at 742.238 kb on - strand, within PGA1_c07210at 742.252 kb on + strand, within PGA1_c07210at 742.253 kb on + strand, within PGA1_c07210at 742.260 kb on - strand, within PGA1_c07210at 742.266 kb on - strand, within PGA1_c07210at 742.332 kb on - strand, within PGA1_c07210at 742.337 kb on - strand, within PGA1_c07210at 742.424 kb on + strand, within PGA1_c07210at 742.427 kb on - strand, within PGA1_c07210at 742.477 kb on + strand, within PGA1_c07210at 742.540 kb on + strandat 742.620 kb on - strandat 742.663 kb on + strandat 742.663 kb on + strandat 742.671 kb on - strand, within PGA1_c07220at 742.738 kb on - strand, within PGA1_c07220at 742.790 kb on - strand, within PGA1_c07220at 742.842 kb on - strand, within PGA1_c07220at 742.892 kb on - strand, within PGA1_c07220at 743.023 kb on + strand, within PGA1_c07220at 743.079 kb on + strand, within PGA1_c07220at 743.109 kb on + strand, within PGA1_c07220at 743.127 kb on - strand, within PGA1_c07220at 743.133 kb on - strand, within PGA1_c07220at 743.156 kb on + strand, within PGA1_c07220at 743.156 kb on + strand, within PGA1_c07220at 743.156 kb on + strand, within PGA1_c07220at 743.156 kb on + strand, within PGA1_c07220at 743.156 kb on + strand, within PGA1_c07220at 743.164 kb on - strand, within PGA1_c07220at 743.164 kb on - strand, within PGA1_c07220at 743.164 kb on - strand, within PGA1_c07220at 743.181 kb on + strand, within PGA1_c07220at 743.192 kb on + strand, within PGA1_c07220at 743.262 kb on + strand, within PGA1_c07220at 743.267 kb on + strand, within PGA1_c07220at 743.270 kb on - strand, within PGA1_c07220at 743.271 kb on + strand, within PGA1_c07220at 743.340 kb on - strandat 743.373 kb on + strandat 743.467 kb on - strandat 743.511 kb on + strand, within PGA1_c07230at 743.512 kb on + strand, within PGA1_c07230at 743.519 kb on - strand, within PGA1_c07230at 743.564 kb on + strand, within PGA1_c07230at 743.572 kb on - strand, within PGA1_c07230at 743.572 kb on - strand, within PGA1_c07230at 743.614 kb on - strand, within PGA1_c07230at 743.630 kb on + strand, within PGA1_c07230at 743.630 kb on + strand, within PGA1_c07230at 743.666 kb on - strand, within PGA1_c07230at 743.780 kb on + strand, within PGA1_c07230at 743.795 kb on + strand, within PGA1_c07230at 743.805 kb on + strand, within PGA1_c07230at 743.876 kb on + strand, within PGA1_c07230at 743.884 kb on - strand, within PGA1_c07230at 743.884 kb on - strand, within PGA1_c07230at 743.886 kb on + strand, within PGA1_c07230at 743.894 kb on - strand, within PGA1_c07230at 743.904 kb on - strand, within PGA1_c07230at 743.904 kb on - strand, within PGA1_c07230at 743.904 kb on - strand, within PGA1_c07230at 743.904 kb on - strand, within PGA1_c07230at 743.904 kb on - strand, within PGA1_c07230at 743.936 kb on - strand, within PGA1_c07230at 744.035 kb on + strand, within PGA1_c07230at 744.078 kb on + strand, within PGA1_c07230at 744.083 kb on + strand, within PGA1_c07230at 744.088 kb on + strand, within PGA1_c07230at 744.096 kb on - strand, within PGA1_c07230at 744.134 kb on + strand, within PGA1_c07230at 744.139 kb on + strand, within PGA1_c07230at 744.162 kb on + strand, within PGA1_c07230at 744.170 kb on - strand, within PGA1_c07230at 744.177 kb on - strand, within PGA1_c07230at 744.184 kb on - strand, within PGA1_c07230at 744.186 kb on + strand, within PGA1_c07230at 744.194 kb on - strandat 744.310 kb on - strandat 744.352 kb on + strandat 744.376 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml
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741,610 - -0.1
741,799 + PGA1_c07210 0.20 +1.2
741,823 - PGA1_c07210 0.22 +1.1
741,849 + PGA1_c07210 0.25 -0.2
741,857 + PGA1_c07210 0.26 -1.0
741,865 - PGA1_c07210 0.27 +0.2
741,865 - PGA1_c07210 0.27 -2.0
741,865 - PGA1_c07210 0.27 -1.5
741,865 - PGA1_c07210 0.27 -0.0
741,865 - PGA1_c07210 0.27 -0.5
741,865 - PGA1_c07210 0.27 +0.6
741,865 - PGA1_c07210 0.27 -0.4
741,901 - PGA1_c07210 0.30 -0.2
741,948 - PGA1_c07210 0.35 -2.2
741,961 + PGA1_c07210 0.36 -0.5
741,994 + PGA1_c07210 0.40 +1.0
742,114 + PGA1_c07210 0.52 -0.3
742,124 + PGA1_c07210 0.53 +0.6
742,127 + PGA1_c07210 0.53 -0.6
742,173 + PGA1_c07210 0.58 -1.5
742,230 + PGA1_c07210 0.64 -0.2
742,230 + PGA1_c07210 0.64 +0.2
742,238 - PGA1_c07210 0.64 +0.4
742,252 + PGA1_c07210 0.66 -2.0
742,253 + PGA1_c07210 0.66 +2.6
742,260 - PGA1_c07210 0.67 +0.5
742,266 - PGA1_c07210 0.67 +1.4
742,332 - PGA1_c07210 0.74 -0.5
742,337 - PGA1_c07210 0.74 -0.3
742,424 + PGA1_c07210 0.83 +1.9
742,427 - PGA1_c07210 0.83 +0.4
742,477 + PGA1_c07210 0.89 +1.3
742,540 + -0.6
742,620 - +0.6
742,663 + -0.4
742,663 + -0.2
742,671 - PGA1_c07220 0.10 +0.0
742,738 - PGA1_c07220 0.18 +0.8
742,790 - PGA1_c07220 0.25 +0.1
742,842 - PGA1_c07220 0.31 -0.5
742,892 - PGA1_c07220 0.37 +1.3
743,023 + PGA1_c07220 0.52 -0.0
743,079 + PGA1_c07220 0.59 +0.6
743,109 + PGA1_c07220 0.63 -1.1
743,127 - PGA1_c07220 0.65 -1.9
743,133 - PGA1_c07220 0.65 +0.9
743,156 + PGA1_c07220 0.68 -0.2
743,156 + PGA1_c07220 0.68 +0.4
743,156 + PGA1_c07220 0.68 -1.6
743,156 + PGA1_c07220 0.68 -2.1
743,156 + PGA1_c07220 0.68 -0.5
743,164 - PGA1_c07220 0.69 -1.3
743,164 - PGA1_c07220 0.69 -1.1
743,164 - PGA1_c07220 0.69 +0.1
743,181 + PGA1_c07220 0.71 +1.7
743,192 + PGA1_c07220 0.72 -1.1
743,262 + PGA1_c07220 0.81 -1.2
743,267 + PGA1_c07220 0.81 +0.3
743,270 - PGA1_c07220 0.82 -1.6
743,271 + PGA1_c07220 0.82 -0.5
743,340 - -1.2
743,373 + -0.4
743,467 - -1.4
743,511 + PGA1_c07230 0.11 -2.0
743,512 + PGA1_c07230 0.11 +1.9
743,519 - PGA1_c07230 0.12 -0.3
743,564 + PGA1_c07230 0.17 -0.7
743,572 - PGA1_c07230 0.18 -0.6
743,572 - PGA1_c07230 0.18 -0.0
743,614 - PGA1_c07230 0.23 -0.3
743,630 + PGA1_c07230 0.25 -0.3
743,630 + PGA1_c07230 0.25 -0.3
743,666 - PGA1_c07230 0.29 +0.0
743,780 + PGA1_c07230 0.42 -0.3
743,795 + PGA1_c07230 0.44 -1.0
743,805 + PGA1_c07230 0.45 -0.6
743,876 + PGA1_c07230 0.53 -1.4
743,884 - PGA1_c07230 0.54 +0.1
743,884 - PGA1_c07230 0.54 -0.8
743,886 + PGA1_c07230 0.54 +0.6
743,894 - PGA1_c07230 0.55 -0.4
743,904 - PGA1_c07230 0.57 -0.2
743,904 - PGA1_c07230 0.57 -0.1
743,904 - PGA1_c07230 0.57 +1.1
743,904 - PGA1_c07230 0.57 -1.2
743,904 - PGA1_c07230 0.57 +0.8
743,936 - PGA1_c07230 0.60 -1.1
744,035 + PGA1_c07230 0.72 +0.6
744,078 + PGA1_c07230 0.77 -0.3
744,083 + PGA1_c07230 0.77 -0.5
744,088 + PGA1_c07230 0.78 -0.0
744,096 - PGA1_c07230 0.79 -0.6
744,134 + PGA1_c07230 0.83 +0.2
744,139 + PGA1_c07230 0.84 -0.2
744,162 + PGA1_c07230 0.87 -2.2
744,170 - PGA1_c07230 0.88 -0.8
744,177 - PGA1_c07230 0.88 -0.5
744,184 - PGA1_c07230 0.89 +2.2
744,186 + PGA1_c07230 0.89 +0.5
744,194 - -0.4
744,310 - -1.0
744,352 + -3.0
744,376 - +1.3

Or see this region's nucleotide sequence