Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05510 and PGA1_c05520 are separated by 48 nucleotides PGA1_c05520 and PGA1_c05530 are separated by 111 nucleotides PGA1_c05530 and PGA1_c05540 are separated by 25 nucleotides
PGA1_c05510: PGA1_c05510 - glyceraldehyde-3-phosphate dehydrogenase 1, at 563,224 to 564,285
_c05510
PGA1_c05520: PGA1_c05520 - hypothetical protein, at 564,334 to 564,834
_c05520
PGA1_c05530: PGA1_c05530 - putative allantoin catabolism protein, at 564,946 to 565,938
_c05530
PGA1_c05540: PGA1_c05540 - transcriptional regulator, IclR family, at 565,964 to 566,782
_c05540
Position (kb) 564
565
566 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 563.958 kb on + strand, within PGA1_c05510 at 563.981 kb on - strand, within PGA1_c05510 at 563.981 kb on - strand, within PGA1_c05510 at 564.026 kb on - strand, within PGA1_c05510 at 564.026 kb on - strand, within PGA1_c05510 at 564.054 kb on + strand, within PGA1_c05510 at 564.062 kb on + strand, within PGA1_c05510 at 564.062 kb on - strand, within PGA1_c05510 at 564.102 kb on - strand, within PGA1_c05510 at 564.163 kb on + strand, within PGA1_c05510 at 564.163 kb on + strand, within PGA1_c05510 at 564.215 kb on - strand at 564.227 kb on - strand at 564.227 kb on - strand at 564.227 kb on - strand at 564.227 kb on - strand at 564.227 kb on - strand at 564.328 kb on - strand at 564.338 kb on + strand at 564.343 kb on + strand at 564.522 kb on - strand, within PGA1_c05520 at 564.600 kb on - strand, within PGA1_c05520 at 564.678 kb on - strand, within PGA1_c05520 at 564.693 kb on + strand, within PGA1_c05520 at 564.712 kb on + strand, within PGA1_c05520 at 564.743 kb on + strand, within PGA1_c05520 at 564.762 kb on + strand, within PGA1_c05520 at 564.807 kb on - strand at 564.850 kb on - strand at 564.850 kb on - strand at 564.850 kb on - strand at 564.850 kb on - strand at 564.850 kb on - strand at 564.865 kb on - strand at 564.893 kb on + strand at 564.900 kb on + strand at 564.901 kb on - strand at 564.939 kb on + strand at 564.947 kb on - strand at 564.947 kb on - strand at 564.947 kb on - strand at 564.947 kb on - strand at 564.947 kb on - strand at 564.961 kb on + strand at 564.974 kb on - strand at 565.007 kb on + strand at 565.153 kb on - strand, within PGA1_c05530 at 565.180 kb on - strand, within PGA1_c05530 at 565.186 kb on + strand, within PGA1_c05530 at 565.396 kb on + strand, within PGA1_c05530 at 565.437 kb on + strand, within PGA1_c05530 at 565.442 kb on + strand, within PGA1_c05530 at 565.449 kb on + strand, within PGA1_c05530 at 565.754 kb on - strand, within PGA1_c05530 at 565.762 kb on - strand, within PGA1_c05530 at 565.821 kb on - strand, within PGA1_c05530 at 565.828 kb on + strand, within PGA1_c05530 at 565.880 kb on + strand at 565.957 kb on + strand at 565.962 kb on + strand at 565.962 kb on + strand at 565.962 kb on + strand at 565.970 kb on - strand at 565.970 kb on - strand at 565.970 kb on - strand at 565.981 kb on - strand at 566.022 kb on + strand at 566.040 kb on - strand at 566.042 kb on - strand at 566.050 kb on + strand, within PGA1_c05540 at 566.075 kb on + strand, within PGA1_c05540 at 566.126 kb on + strand, within PGA1_c05540 at 566.146 kb on + strand, within PGA1_c05540 at 566.156 kb on - strand, within PGA1_c05540 at 566.158 kb on + strand, within PGA1_c05540 at 566.166 kb on - strand, within PGA1_c05540 at 566.166 kb on - strand, within PGA1_c05540 at 566.166 kb on - strand, within PGA1_c05540 at 566.166 kb on - strand, within PGA1_c05540 at 566.166 kb on - strand, within PGA1_c05540 at 566.166 kb on - strand, within PGA1_c05540 at 566.173 kb on - strand, within PGA1_c05540 at 566.181 kb on + strand, within PGA1_c05540 at 566.238 kb on + strand, within PGA1_c05540 at 566.296 kb on + strand, within PGA1_c05540 at 566.312 kb on + strand, within PGA1_c05540 at 566.312 kb on + strand, within PGA1_c05540 at 566.313 kb on + strand, within PGA1_c05540 at 566.400 kb on - strand, within PGA1_c05540 at 566.410 kb on - strand, within PGA1_c05540 at 566.434 kb on + strand, within PGA1_c05540 at 566.444 kb on - strand, within PGA1_c05540 at 566.456 kb on + strand, within PGA1_c05540 at 566.473 kb on - strand, within PGA1_c05540 at 566.513 kb on - strand, within PGA1_c05540 at 566.515 kb on + strand, within PGA1_c05540 at 566.532 kb on - strand, within PGA1_c05540 at 566.550 kb on - strand, within PGA1_c05540 at 566.606 kb on + strand, within PGA1_c05540 at 566.612 kb on + strand, within PGA1_c05540 at 566.612 kb on + strand, within PGA1_c05540 at 566.612 kb on + strand, within PGA1_c05540 at 566.612 kb on + strand, within PGA1_c05540 at 566.612 kb on + strand, within PGA1_c05540 at 566.612 kb on + strand, within PGA1_c05540 at 566.612 kb on + strand, within PGA1_c05540 at 566.612 kb on + strand, within PGA1_c05540 at 566.615 kb on - strand, within PGA1_c05540 at 566.615 kb on - strand, within PGA1_c05540 at 566.620 kb on - strand, within PGA1_c05540 at 566.644 kb on + strand, within PGA1_c05540 at 566.650 kb on + strand, within PGA1_c05540 at 566.675 kb on + strand, within PGA1_c05540 at 566.770 kb on - strand at 566.799 kb on + strand at 566.800 kb on + strand at 566.800 kb on + strand at 566.808 kb on - strand at 566.830 kb on + strand at 566.831 kb on + strand at 566.831 kb on + strand at 566.831 kb on + strand at 566.831 kb on + strand at 566.882 kb on + strand at 566.882 kb on + strand at 566.890 kb on - strand at 566.895 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 563,958 + PGA1_c05510 0.69 +0.2 563,981 - PGA1_c05510 0.71 -1.6 563,981 - PGA1_c05510 0.71 +1.3 564,026 - PGA1_c05510 0.76 -0.3 564,026 - PGA1_c05510 0.76 -1.4 564,054 + PGA1_c05510 0.78 -1.4 564,062 + PGA1_c05510 0.79 +1.6 564,062 - PGA1_c05510 0.79 +0.2 564,102 - PGA1_c05510 0.83 -0.2 564,163 + PGA1_c05510 0.88 -0.3 564,163 + PGA1_c05510 0.88 +1.5 564,215 - -0.0 564,227 - +0.5 564,227 - -0.6 564,227 - -1.0 564,227 - +1.4 564,227 - +0.9 564,328 - +0.1 564,338 + -0.9 564,343 + -2.0 564,522 - PGA1_c05520 0.38 -0.1 564,600 - PGA1_c05520 0.53 -0.2 564,678 - PGA1_c05520 0.69 -0.8 564,693 + PGA1_c05520 0.72 +0.7 564,712 + PGA1_c05520 0.75 +0.9 564,743 + PGA1_c05520 0.82 +0.2 564,762 + PGA1_c05520 0.85 -1.4 564,807 - -0.5 564,850 - +0.9 564,850 - -0.7 564,850 - -0.1 564,850 - +1.2 564,850 - +0.1 564,865 - -2.9 564,893 + -0.1 564,900 + +1.5 564,901 - +0.5 564,939 + -3.1 564,947 - -1.7 564,947 - -0.1 564,947 - -0.9 564,947 - +1.7 564,947 - -0.4 564,961 + +0.6 564,974 - +0.2 565,007 + -1.7 565,153 - PGA1_c05530 0.21 -2.9 565,180 - PGA1_c05530 0.24 -1.5 565,186 + PGA1_c05530 0.24 +0.6 565,396 + PGA1_c05530 0.45 -0.6 565,437 + PGA1_c05530 0.49 -0.2 565,442 + PGA1_c05530 0.50 -1.3 565,449 + PGA1_c05530 0.51 -0.7 565,754 - PGA1_c05530 0.81 -0.9 565,762 - PGA1_c05530 0.82 -0.7 565,821 - PGA1_c05530 0.88 +1.0 565,828 + PGA1_c05530 0.89 -0.5 565,880 + -1.6 565,957 + -1.0 565,962 + +1.8 565,962 + -0.0 565,962 + -1.5 565,970 - +1.2 565,970 - +0.1 565,970 - +0.1 565,981 - +1.2 566,022 + +0.6 566,040 - +1.5 566,042 - +0.6 566,050 + PGA1_c05540 0.11 +1.5 566,075 + PGA1_c05540 0.14 +1.6 566,126 + PGA1_c05540 0.20 +0.6 566,146 + PGA1_c05540 0.22 -1.1 566,156 - PGA1_c05540 0.23 +1.6 566,158 + PGA1_c05540 0.24 -0.5 566,166 - PGA1_c05540 0.25 +1.0 566,166 - PGA1_c05540 0.25 +0.6 566,166 - PGA1_c05540 0.25 +1.5 566,166 - PGA1_c05540 0.25 +2.2 566,166 - PGA1_c05540 0.25 +2.1 566,166 - PGA1_c05540 0.25 -2.9 566,173 - PGA1_c05540 0.26 -0.2 566,181 + PGA1_c05540 0.26 -0.4 566,238 + PGA1_c05540 0.33 -0.3 566,296 + PGA1_c05540 0.41 +0.3 566,312 + PGA1_c05540 0.42 +1.8 566,312 + PGA1_c05540 0.42 +0.9 566,313 + PGA1_c05540 0.43 -1.7 566,400 - PGA1_c05540 0.53 +0.5 566,410 - PGA1_c05540 0.54 +2.6 566,434 + PGA1_c05540 0.57 +0.9 566,444 - PGA1_c05540 0.59 -0.2 566,456 + PGA1_c05540 0.60 -0.4 566,473 - PGA1_c05540 0.62 -2.4 566,513 - PGA1_c05540 0.67 -1.7 566,515 + PGA1_c05540 0.67 +1.1 566,532 - PGA1_c05540 0.69 -1.9 566,550 - PGA1_c05540 0.72 +1.1 566,606 + PGA1_c05540 0.78 +0.4 566,612 + PGA1_c05540 0.79 +1.1 566,612 + PGA1_c05540 0.79 +1.1 566,612 + PGA1_c05540 0.79 +1.8 566,612 + PGA1_c05540 0.79 +1.0 566,612 + PGA1_c05540 0.79 -0.8 566,612 + PGA1_c05540 0.79 -1.8 566,612 + PGA1_c05540 0.79 +0.0 566,612 + PGA1_c05540 0.79 -0.4 566,615 - PGA1_c05540 0.79 +0.9 566,615 - PGA1_c05540 0.79 -0.7 566,620 - PGA1_c05540 0.80 -0.7 566,644 + PGA1_c05540 0.83 +0.3 566,650 + PGA1_c05540 0.84 +0.6 566,675 + PGA1_c05540 0.87 -1.4 566,770 - -0.3 566,799 + +0.3 566,800 + -0.1 566,800 + +0.2 566,808 - +0.2 566,830 + +1.1 566,831 + -0.1 566,831 + -1.4 566,831 + -0.0 566,831 + -1.5 566,882 + +0.9 566,882 + +0.1 566,890 - -1.4 566,895 - -2.4
Or see this region's nucleotide sequence