Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04360

Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04350 and PGA1_c04360 overlap by 4 nucleotidesPGA1_c04360 and PGA1_c04370 overlap by 4 nucleotides PGA1_c04350: PGA1_c04350 - putative glycosyltransferase protein, at 419,898 to 421,040 _c04350 PGA1_c04360: PGA1_c04360 - putative phosphoglycerate mutase family protein, at 421,037 to 421,627 _c04360 PGA1_c04370: PGA1_c04370 - putative glycosyltransferase protein, at 421,624 to 422,658 _c04370 Position (kb) 421 422Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 420.068 kb on + strand, within PGA1_c04350at 420.068 kb on + strand, within PGA1_c04350at 420.076 kb on - strand, within PGA1_c04350at 420.076 kb on - strand, within PGA1_c04350at 420.076 kb on - strand, within PGA1_c04350at 420.076 kb on - strand, within PGA1_c04350at 420.156 kb on + strand, within PGA1_c04350at 420.237 kb on + strand, within PGA1_c04350at 420.259 kb on - strand, within PGA1_c04350at 420.261 kb on - strand, within PGA1_c04350at 420.276 kb on - strand, within PGA1_c04350at 420.324 kb on + strand, within PGA1_c04350at 420.378 kb on + strand, within PGA1_c04350at 420.435 kb on - strand, within PGA1_c04350at 420.558 kb on + strand, within PGA1_c04350at 420.665 kb on + strand, within PGA1_c04350at 420.665 kb on + strand, within PGA1_c04350at 420.665 kb on + strand, within PGA1_c04350at 420.665 kb on + strand, within PGA1_c04350at 420.678 kb on + strand, within PGA1_c04350at 420.701 kb on + strand, within PGA1_c04350at 420.701 kb on + strand, within PGA1_c04350at 420.701 kb on + strand, within PGA1_c04350at 420.719 kb on - strand, within PGA1_c04350at 420.746 kb on - strand, within PGA1_c04350at 420.775 kb on - strand, within PGA1_c04350at 420.775 kb on - strand, within PGA1_c04350at 420.780 kb on - strand, within PGA1_c04350at 420.780 kb on - strand, within PGA1_c04350at 420.782 kb on + strand, within PGA1_c04350at 420.804 kb on + strand, within PGA1_c04350at 420.812 kb on - strand, within PGA1_c04350at 420.895 kb on - strand, within PGA1_c04350at 420.902 kb on + strand, within PGA1_c04350at 420.910 kb on - strand, within PGA1_c04350at 420.910 kb on - strand, within PGA1_c04350at 420.910 kb on - strand, within PGA1_c04350at 420.922 kb on - strand, within PGA1_c04350at 420.940 kb on - strandat 420.977 kb on + strandat 420.990 kb on + strandat 420.993 kb on + strandat 420.998 kb on + strandat 420.998 kb on + strandat 421.003 kb on + strandat 421.144 kb on + strand, within PGA1_c04360at 421.215 kb on + strand, within PGA1_c04360at 421.243 kb on + strand, within PGA1_c04360at 421.297 kb on - strand, within PGA1_c04360at 421.313 kb on + strand, within PGA1_c04360at 421.321 kb on - strand, within PGA1_c04360at 421.355 kb on - strand, within PGA1_c04360at 421.355 kb on - strand, within PGA1_c04360at 421.362 kb on - strand, within PGA1_c04360at 421.372 kb on + strand, within PGA1_c04360at 421.377 kb on - strand, within PGA1_c04360at 421.377 kb on - strand, within PGA1_c04360at 421.380 kb on - strand, within PGA1_c04360at 421.391 kb on - strand, within PGA1_c04360at 421.468 kb on + strand, within PGA1_c04360at 421.476 kb on - strand, within PGA1_c04360at 421.480 kb on - strand, within PGA1_c04360at 421.503 kb on + strand, within PGA1_c04360at 421.534 kb on - strand, within PGA1_c04360at 421.536 kb on + strand, within PGA1_c04360at 421.591 kb on - strandat 421.604 kb on + strandat 421.645 kb on + strandat 421.690 kb on + strandat 421.726 kb on - strandat 421.748 kb on - strand, within PGA1_c04370at 421.808 kb on - strand, within PGA1_c04370at 421.819 kb on - strand, within PGA1_c04370at 421.828 kb on + strand, within PGA1_c04370at 421.838 kb on + strand, within PGA1_c04370at 421.846 kb on - strand, within PGA1_c04370at 421.848 kb on + strand, within PGA1_c04370at 421.856 kb on - strand, within PGA1_c04370at 421.936 kb on + strand, within PGA1_c04370at 422.026 kb on + strand, within PGA1_c04370at 422.039 kb on - strand, within PGA1_c04370at 422.044 kb on - strand, within PGA1_c04370at 422.050 kb on - strand, within PGA1_c04370at 422.084 kb on + strand, within PGA1_c04370at 422.141 kb on + strand, within PGA1_c04370at 422.141 kb on + strand, within PGA1_c04370at 422.146 kb on + strand, within PGA1_c04370at 422.169 kb on - strand, within PGA1_c04370at 422.171 kb on - strand, within PGA1_c04370at 422.272 kb on + strand, within PGA1_c04370at 422.280 kb on - strand, within PGA1_c04370at 422.280 kb on - strand, within PGA1_c04370at 422.302 kb on + strand, within PGA1_c04370at 422.396 kb on - strand, within PGA1_c04370at 422.537 kb on + strand, within PGA1_c04370at 422.545 kb on - strand, within PGA1_c04370at 422.619 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml
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420,068 + PGA1_c04350 0.15 -1.9
420,068 + PGA1_c04350 0.15 -1.3
420,076 - PGA1_c04350 0.16 -1.3
420,076 - PGA1_c04350 0.16 -3.8
420,076 - PGA1_c04350 0.16 -4.1
420,076 - PGA1_c04350 0.16 -2.3
420,156 + PGA1_c04350 0.23 -1.3
420,237 + PGA1_c04350 0.30 -4.1
420,259 - PGA1_c04350 0.32 -2.3
420,261 - PGA1_c04350 0.32 -2.7
420,276 - PGA1_c04350 0.33 -3.0
420,324 + PGA1_c04350 0.37 -2.7
420,378 + PGA1_c04350 0.42 -3.3
420,435 - PGA1_c04350 0.47 -3.6
420,558 + PGA1_c04350 0.58 -2.7
420,665 + PGA1_c04350 0.67 -4.0
420,665 + PGA1_c04350 0.67 -2.7
420,665 + PGA1_c04350 0.67 -1.9
420,665 + PGA1_c04350 0.67 -2.2
420,678 + PGA1_c04350 0.68 -1.7
420,701 + PGA1_c04350 0.70 -0.9
420,701 + PGA1_c04350 0.70 -2.3
420,701 + PGA1_c04350 0.70 -1.9
420,719 - PGA1_c04350 0.72 -2.7
420,746 - PGA1_c04350 0.74 -2.8
420,775 - PGA1_c04350 0.77 +3.0
420,775 - PGA1_c04350 0.77 -2.3
420,780 - PGA1_c04350 0.77 -3.3
420,780 - PGA1_c04350 0.77 -4.7
420,782 + PGA1_c04350 0.77 -2.2
420,804 + PGA1_c04350 0.79 -2.5
420,812 - PGA1_c04350 0.80 -4.0
420,895 - PGA1_c04350 0.87 -3.0
420,902 + PGA1_c04350 0.88 -3.3
420,910 - PGA1_c04350 0.89 -3.0
420,910 - PGA1_c04350 0.89 -4.0
420,910 - PGA1_c04350 0.89 -2.5
420,922 - PGA1_c04350 0.90 -1.3
420,940 - -1.7
420,977 + -3.0
420,990 + -1.2
420,993 + -2.0
420,998 + -3.3
420,998 + -4.3
421,003 + -2.8
421,144 + PGA1_c04360 0.18 -0.9
421,215 + PGA1_c04360 0.30 -3.3
421,243 + PGA1_c04360 0.35 -2.4
421,297 - PGA1_c04360 0.44 -1.7
421,313 + PGA1_c04360 0.47 -3.2
421,321 - PGA1_c04360 0.48 -3.2
421,355 - PGA1_c04360 0.54 -3.2
421,355 - PGA1_c04360 0.54 -2.3
421,362 - PGA1_c04360 0.55 -2.5
421,372 + PGA1_c04360 0.57 -2.2
421,377 - PGA1_c04360 0.58 -1.7
421,377 - PGA1_c04360 0.58 -0.9
421,380 - PGA1_c04360 0.58 -3.3
421,391 - PGA1_c04360 0.60 -4.5
421,468 + PGA1_c04360 0.73 -3.3
421,476 - PGA1_c04360 0.74 -2.5
421,480 - PGA1_c04360 0.75 -4.2
421,503 + PGA1_c04360 0.79 -2.4
421,534 - PGA1_c04360 0.84 -1.7
421,536 + PGA1_c04360 0.84 -1.3
421,591 - -0.9
421,604 + -3.1
421,645 + -0.0
421,690 + -4.2
421,726 - -2.8
421,748 - PGA1_c04370 0.12 -2.7
421,808 - PGA1_c04370 0.18 -3.3
421,819 - PGA1_c04370 0.19 -2.5
421,828 + PGA1_c04370 0.20 -2.7
421,838 + PGA1_c04370 0.21 -2.4
421,846 - PGA1_c04370 0.21 -3.2
421,848 + PGA1_c04370 0.22 -1.1
421,856 - PGA1_c04370 0.22 -3.3
421,936 + PGA1_c04370 0.30 -2.2
422,026 + PGA1_c04370 0.39 -4.2
422,039 - PGA1_c04370 0.40 -3.0
422,044 - PGA1_c04370 0.41 -2.5
422,050 - PGA1_c04370 0.41 -3.6
422,084 + PGA1_c04370 0.44 -3.6
422,141 + PGA1_c04370 0.50 -1.7
422,141 + PGA1_c04370 0.50 -2.5
422,146 + PGA1_c04370 0.50 -3.5
422,169 - PGA1_c04370 0.53 -3.8
422,171 - PGA1_c04370 0.53 -2.3
422,272 + PGA1_c04370 0.63 -2.5
422,280 - PGA1_c04370 0.63 -2.8
422,280 - PGA1_c04370 0.63 -0.3
422,302 + PGA1_c04370 0.66 -1.9
422,396 - PGA1_c04370 0.75 -2.8
422,537 + PGA1_c04370 0.88 -2.7
422,545 - PGA1_c04370 0.89 -3.7
422,619 + -0.9

Or see this region's nucleotide sequence