Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00430 and PGA1_65p00440 are separated by 154 nucleotides PGA1_65p00440 and PGA1_65p00450 are separated by 307 nucleotides
PGA1_65p00430: PGA1_65p00430 - putative glycosyl transferase, at 58,298 to 59,341
_65p00430
PGA1_65p00440: PGA1_65p00440 - UDP-glucuronate 5'-epimerase, at 59,496 to 60,506
_65p00440
PGA1_65p00450: PGA1_65p00450 - UDP-glucose 6-dehydrogenase Ugd, at 60,814 to 62,118
_65p00450
Position (kb)
59
60
61 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 58.550 kb on + strand, within PGA1_65p00430 at 58.565 kb on - strand, within PGA1_65p00430 at 58.633 kb on + strand at 58.633 kb on + strand, within PGA1_65p00430 at 58.633 kb on + strand, within PGA1_65p00430 at 58.641 kb on - strand, within PGA1_65p00430 at 58.646 kb on - strand, within PGA1_65p00430 at 58.648 kb on - strand, within PGA1_65p00430 at 58.651 kb on + strand, within PGA1_65p00430 at 58.736 kb on + strand, within PGA1_65p00430 at 58.820 kb on - strand, within PGA1_65p00430 at 58.931 kb on + strand, within PGA1_65p00430 at 58.939 kb on - strand, within PGA1_65p00430 at 59.115 kb on + strand, within PGA1_65p00430 at 59.316 kb on + strand at 59.393 kb on - strand at 59.459 kb on + strand at 60.201 kb on + strand, within PGA1_65p00440 at 60.503 kb on - strand at 60.524 kb on - strand at 60.524 kb on - strand at 60.529 kb on - strand at 60.531 kb on + strand at 60.764 kb on - strand at 60.798 kb on + strand at 60.828 kb on + strand at 60.886 kb on + strand at 60.894 kb on - strand at 61.149 kb on + strand, within PGA1_65p00450 at 61.149 kb on + strand, within PGA1_65p00450 at 61.207 kb on + strand, within PGA1_65p00450
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 58,550 + PGA1_65p00430 0.24 -1.2 58,565 - PGA1_65p00430 0.26 -0.2 58,633 + +0.1 58,633 + PGA1_65p00430 0.32 -0.8 58,633 + PGA1_65p00430 0.32 -1.3 58,641 - PGA1_65p00430 0.33 +0.8 58,646 - PGA1_65p00430 0.33 +1.4 58,648 - PGA1_65p00430 0.34 -0.7 58,651 + PGA1_65p00430 0.34 -0.5 58,736 + PGA1_65p00430 0.42 +0.7 58,820 - PGA1_65p00430 0.50 -0.2 58,931 + PGA1_65p00430 0.61 -2.5 58,939 - PGA1_65p00430 0.61 -0.9 59,115 + PGA1_65p00430 0.78 +2.0 59,316 + +0.4 59,393 - -1.1 59,459 + +0.1 60,201 + PGA1_65p00440 0.70 -1.5 60,503 - +0.9 60,524 - -0.1 60,524 - -0.7 60,529 - +0.5 60,531 + +0.9 60,764 - -2.9 60,798 + +0.8 60,828 + -2.2 60,886 + -2.7 60,894 - -1.9 61,149 + PGA1_65p00450 0.26 +0.1 61,149 + PGA1_65p00450 0.26 -2.7 61,207 + PGA1_65p00450 0.30 -1.9
Or see this region's nucleotide sequence