Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_65p00310

Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_65p00300 and PGA1_65p00310 are separated by 4 nucleotidesPGA1_65p00310 and PGA1_65p00320 are separated by 190 nucleotides PGA1_65p00300: PGA1_65p00300 - GDP-L-fucose synthetase Fcl, at 39,409 to 40,398 _65p00300 PGA1_65p00310: PGA1_65p00310 - GDP-mannose 4,6-dehydratase Gmd, at 40,403 to 41,521 _65p00310 PGA1_65p00320: PGA1_65p00320 - type I secretion membrane fusion protein, at 41,712 to 43,019 _65p00320 Position (kb) 40 41 42Strain fitness (log2 ratio) -3 -2 -1 0 1at 39.457 kb on + strandat 39.465 kb on - strandat 39.586 kb on + strand, within PGA1_65p00300at 39.594 kb on - strand, within PGA1_65p00300at 39.939 kb on + strand, within PGA1_65p00300at 39.979 kb on - strand, within PGA1_65p00300at 40.103 kb on + strand, within PGA1_65p00300at 40.343 kb on - strandat 40.501 kb on + strandat 40.804 kb on + strand, within PGA1_65p00310at 40.883 kb on + strand, within PGA1_65p00310at 40.893 kb on - strand, within PGA1_65p00310at 40.901 kb on - strand, within PGA1_65p00310at 41.119 kb on + strand, within PGA1_65p00310at 41.119 kb on + strand, within PGA1_65p00310at 41.322 kb on - strand, within PGA1_65p00310at 41.537 kb on - strandat 41.556 kb on + strandat 41.556 kb on + strandat 41.564 kb on - strandat 41.564 kb on - strandat 41.585 kb on - strandat 41.600 kb on + strandat 41.889 kb on - strand, within PGA1_65p00320at 41.977 kb on - strand, within PGA1_65p00320

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml
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39,457 + -2.2
39,465 - -2.7
39,586 + PGA1_65p00300 0.18 -2.5
39,594 - PGA1_65p00300 0.19 -0.7
39,939 + PGA1_65p00300 0.54 +1.1
39,979 - PGA1_65p00300 0.58 -3.2
40,103 + PGA1_65p00300 0.70 -0.9
40,343 - -2.2
40,501 + -1.5
40,804 + PGA1_65p00310 0.36 -2.7
40,883 + PGA1_65p00310 0.43 -0.3
40,893 - PGA1_65p00310 0.44 -1.3
40,901 - PGA1_65p00310 0.45 -2.1
41,119 + PGA1_65p00310 0.64 -2.2
41,119 + PGA1_65p00310 0.64 -2.1
41,322 - PGA1_65p00310 0.82 -2.9
41,537 - +1.1
41,556 + -2.2
41,556 + -0.3
41,564 - +0.1
41,564 - -1.7
41,585 - +0.5
41,600 + +0.1
41,889 - PGA1_65p00320 0.14 -0.9
41,977 - PGA1_65p00320 0.20 +0.3

Or see this region's nucleotide sequence