Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01410 and PGA1_262p01420 are separated by 631 nucleotides PGA1_262p01420 and PGA1_262p01430 overlap by 4 nucleotides
PGA1_262p01410: PGA1_262p01410 - malate/L-lactate dehydrogenase-like protein, at 152,967 to 153,404
_262p01410
PGA1_262p01420: PGA1_262p01420 - Protein of unknown function (DUF3726)., at 154,036 to 154,686
_262p01420
PGA1_262p01430: PGA1_262p01430 - hypothetical protein, at 154,683 to 156,374
_262p01430
Position (kb) 154
155 Strain fitness (log2 ratio) -2
-1
0
1
2 at 153.193 kb on + strand, within PGA1_262p01410 at 153.201 kb on - strand, within PGA1_262p01410 at 153.342 kb on - strand, within PGA1_262p01410 at 153.367 kb on - strand at 153.369 kb on - strand at 153.648 kb on - strand at 153.691 kb on - strand at 153.749 kb on - strand at 153.749 kb on - strand at 153.949 kb on + strand at 154.006 kb on - strand at 154.110 kb on + strand, within PGA1_262p01420 at 154.469 kb on + strand, within PGA1_262p01420 at 154.697 kb on + strand at 154.743 kb on - strand at 154.839 kb on + strand at 154.995 kb on + strand, within PGA1_262p01430 at 155.002 kb on + strand, within PGA1_262p01430 at 155.171 kb on + strand, within PGA1_262p01430 at 155.174 kb on - strand, within PGA1_262p01430 at 155.174 kb on - strand, within PGA1_262p01430 at 155.261 kb on - strand, within PGA1_262p01430 at 155.316 kb on - strand, within PGA1_262p01430 at 155.350 kb on + strand, within PGA1_262p01430 at 155.369 kb on + strand, within PGA1_262p01430 at 155.377 kb on - strand, within PGA1_262p01430 at 155.479 kb on - strand, within PGA1_262p01430 at 155.509 kb on + strand, within PGA1_262p01430 at 155.517 kb on - strand, within PGA1_262p01430 at 155.527 kb on - strand, within PGA1_262p01430 at 155.678 kb on - strand, within PGA1_262p01430
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 153,193 + PGA1_262p01410 0.52 +1.5 153,201 - PGA1_262p01410 0.53 -0.3 153,342 - PGA1_262p01410 0.86 +0.1 153,367 - -0.3 153,369 - -0.6 153,648 - +1.1 153,691 - -1.9 153,749 - +0.4 153,749 - -0.9 153,949 + +1.1 154,006 - -1.5 154,110 + PGA1_262p01420 0.11 -1.7 154,469 + PGA1_262p01420 0.67 +0.5 154,697 + +0.7 154,743 - -0.1 154,839 + +0.1 154,995 + PGA1_262p01430 0.18 +0.1 155,002 + PGA1_262p01430 0.19 -2.4 155,171 + PGA1_262p01430 0.29 -0.4 155,174 - PGA1_262p01430 0.29 +2.4 155,174 - PGA1_262p01430 0.29 -1.2 155,261 - PGA1_262p01430 0.34 +0.6 155,316 - PGA1_262p01430 0.37 -1.5 155,350 + PGA1_262p01430 0.39 +0.1 155,369 + PGA1_262p01430 0.41 +0.8 155,377 - PGA1_262p01430 0.41 -0.6 155,479 - PGA1_262p01430 0.47 -0.8 155,509 + PGA1_262p01430 0.49 -1.5 155,517 - PGA1_262p01430 0.49 -0.9 155,527 - PGA1_262p01430 0.50 -1.5 155,678 - PGA1_262p01430 0.59 -0.9
Or see this region's nucleotide sequence