Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01260 and PGA1_262p01270 are separated by 37 nucleotides PGA1_262p01270 and PGA1_262p01280 are separated by 2 nucleotides PGA1_262p01280 and PGA1_262p01290 are separated by 97 nucleotides
PGA1_262p01260: PGA1_262p01260 - copper-containing nitrite reductase NirK, at 137,242 to 138,465
_262p01260
PGA1_262p01270: PGA1_262p01270 - Uncharacterized conserved protein, at 138,503 to 139,261
_262p01270
PGA1_262p01280: PGA1_262p01280 - transcriptional regulator, TetR family, at 139,264 to 139,872
_262p01280
PGA1_262p01290: PGA1_262p01290 - transcriptional regulator, AraC family, at 139,970 to 140,977
_262p01290
Position (kb)
139
140 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 138.344 kb on + strand at 138.383 kb on - strand at 138.827 kb on - strand, within PGA1_262p01270 at 138.827 kb on - strand, within PGA1_262p01270 at 138.850 kb on - strand, within PGA1_262p01270 at 139.092 kb on - strand, within PGA1_262p01270 at 139.151 kb on + strand, within PGA1_262p01270 at 139.579 kb on + strand, within PGA1_262p01280 at 139.734 kb on - strand, within PGA1_262p01280 at 139.734 kb on - strand, within PGA1_262p01280 at 139.734 kb on - strand, within PGA1_262p01280 at 139.770 kb on - strand, within PGA1_262p01280 at 140.074 kb on - strand, within PGA1_262p01290 at 140.079 kb on - strand, within PGA1_262p01290 at 140.152 kb on + strand, within PGA1_262p01290 at 140.215 kb on - strand, within PGA1_262p01290 at 140.215 kb on - strand, within PGA1_262p01290 at 140.446 kb on + strand, within PGA1_262p01290 at 140.454 kb on - strand, within PGA1_262p01290 at 140.533 kb on - strand, within PGA1_262p01290 at 140.620 kb on - strand, within PGA1_262p01290 at 140.637 kb on + strand, within PGA1_262p01290 at 140.647 kb on + strand, within PGA1_262p01290
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 138,344 + +0.8 138,383 - -2.7 138,827 - PGA1_262p01270 0.43 -0.6 138,827 - PGA1_262p01270 0.43 +0.2 138,850 - PGA1_262p01270 0.46 -0.7 139,092 - PGA1_262p01270 0.78 -0.9 139,151 + PGA1_262p01270 0.85 +2.4 139,579 + PGA1_262p01280 0.52 -0.1 139,734 - PGA1_262p01280 0.77 -1.2 139,734 - PGA1_262p01280 0.77 +1.1 139,734 - PGA1_262p01280 0.77 -1.9 139,770 - PGA1_262p01280 0.83 -2.2 140,074 - PGA1_262p01290 0.10 +0.1 140,079 - PGA1_262p01290 0.11 +0.6 140,152 + PGA1_262p01290 0.18 +1.1 140,215 - PGA1_262p01290 0.24 +0.4 140,215 - PGA1_262p01290 0.24 -2.7 140,446 + PGA1_262p01290 0.47 -0.1 140,454 - PGA1_262p01290 0.48 -0.3 140,533 - PGA1_262p01290 0.56 -0.4 140,620 - PGA1_262p01290 0.64 -0.6 140,637 + PGA1_262p01290 0.66 -0.7 140,647 + PGA1_262p01290 0.67 -0.2
Or see this region's nucleotide sequence