Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00360 and PGA1_262p00370 are separated by 812 nucleotides PGA1_262p00370 and PGA1_262p00380 are separated by 120 nucleotides
PGA1_262p00360: PGA1_262p00360 - methyl-accepting chemotaxis protein, at 40,851 to 43,001
_262p00360
PGA1_262p00370: PGA1_262p00370 - putative polysaccharide synthase, at 43,814 to 45,307
_262p00370
PGA1_262p00380: PGA1_262p00380 - sugar transferase, at 45,428 to 46,111
_262p00380
Position (kb) 43
44
45
46 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 42.848 kb on - strand at 43.043 kb on + strand at 43.065 kb on + strand at 43.069 kb on + strand at 43.105 kb on + strand at 43.113 kb on - strand at 43.113 kb on - strand at 43.122 kb on + strand at 43.235 kb on - strand at 43.345 kb on + strand at 43.374 kb on + strand at 43.382 kb on - strand at 43.456 kb on + strand at 43.475 kb on + strand at 43.595 kb on - strand at 43.747 kb on + strand at 43.815 kb on - strand at 43.968 kb on - strand, within PGA1_262p00370 at 44.017 kb on - strand, within PGA1_262p00370 at 44.027 kb on - strand, within PGA1_262p00370 at 44.251 kb on - strand, within PGA1_262p00370 at 44.368 kb on - strand, within PGA1_262p00370 at 44.421 kb on - strand, within PGA1_262p00370 at 44.491 kb on - strand, within PGA1_262p00370 at 44.566 kb on - strand, within PGA1_262p00370 at 44.760 kb on + strand, within PGA1_262p00370 at 44.773 kb on - strand, within PGA1_262p00370 at 45.037 kb on - strand, within PGA1_262p00370 at 45.047 kb on - strand, within PGA1_262p00370 at 45.096 kb on - strand, within PGA1_262p00370 at 45.277 kb on + strand at 45.279 kb on + strand at 45.365 kb on + strand at 45.392 kb on + strand at 45.392 kb on + strand at 45.400 kb on - strand at 45.402 kb on + strand at 45.402 kb on + strand at 45.402 kb on + strand at 45.402 kb on + strand at 45.407 kb on + strand at 45.407 kb on + strand at 45.407 kb on + strand at 45.410 kb on - strand at 45.413 kb on + strand at 45.413 kb on + strand at 45.428 kb on + strand at 45.535 kb on + strand, within PGA1_262p00380 at 45.543 kb on - strand, within PGA1_262p00380 at 45.565 kb on - strand, within PGA1_262p00380 at 45.608 kb on - strand, within PGA1_262p00380 at 45.769 kb on + strand, within PGA1_262p00380 at 45.788 kb on + strand, within PGA1_262p00380 at 45.796 kb on - strand, within PGA1_262p00380 at 45.881 kb on + strand, within PGA1_262p00380 at 45.890 kb on - strand, within PGA1_262p00380 at 46.146 kb on - strand at 46.149 kb on + strand at 46.254 kb on - strand at 46.290 kb on - strand at 46.290 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 42,848 - -0.4 43,043 + +0.9 43,065 + -0.1 43,069 + -0.2 43,105 + -0.4 43,113 - -0.1 43,113 - +0.7 43,122 + -3.6 43,235 - -0.9 43,345 + -0.9 43,374 + -0.9 43,382 - -0.1 43,456 + -0.4 43,475 + +0.2 43,595 - +0.7 43,747 + +1.8 43,815 - -1.5 43,968 - PGA1_262p00370 0.10 +1.1 44,017 - PGA1_262p00370 0.14 +0.6 44,027 - PGA1_262p00370 0.14 -0.3 44,251 - PGA1_262p00370 0.29 +0.7 44,368 - PGA1_262p00370 0.37 +0.7 44,421 - PGA1_262p00370 0.41 -0.4 44,491 - PGA1_262p00370 0.45 +2.4 44,566 - PGA1_262p00370 0.50 +0.8 44,760 + PGA1_262p00370 0.63 +0.3 44,773 - PGA1_262p00370 0.64 +0.1 45,037 - PGA1_262p00370 0.82 -0.1 45,047 - PGA1_262p00370 0.83 -0.1 45,096 - PGA1_262p00370 0.86 +0.9 45,277 + +0.3 45,279 + -0.1 45,365 + +2.5 45,392 + -0.8 45,392 + +0.4 45,400 - +1.5 45,402 + -0.1 45,402 + +0.1 45,402 + +0.4 45,402 + -0.5 45,407 + +0.4 45,407 + -1.2 45,407 + -1.7 45,410 - +0.7 45,413 + +1.5 45,413 + +2.4 45,428 + +0.6 45,535 + PGA1_262p00380 0.16 +0.1 45,543 - PGA1_262p00380 0.17 +0.7 45,565 - PGA1_262p00380 0.20 -0.9 45,608 - PGA1_262p00380 0.26 -1.5 45,769 + PGA1_262p00380 0.50 +0.7 45,788 + PGA1_262p00380 0.53 -0.4 45,796 - PGA1_262p00380 0.54 -0.3 45,881 + PGA1_262p00380 0.66 +0.4 45,890 - PGA1_262p00380 0.68 -0.7 46,146 - +1.5 46,149 + +0.1 46,254 - -0.4 46,290 - -0.3 46,290 - +1.1
Or see this region's nucleotide sequence