Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c35070 and PGA1_c35080 are separated by 20 nucleotides PGA1_c35080 and PGA1_c35090 are separated by 1 nucleotides PGA1_c35090 and PGA1_c35100 are separated by 0 nucleotides
PGA1_c35070: PGA1_c35070 - chromosome-partitioning protein ParB, at 3,679,565 to 3,680,458
_c35070
PGA1_c35080: PGA1_c35080 - chromosome partitioning protein ParA, at 3,680,479 to 3,681,279
_c35080
PGA1_c35090: PGA1_c35090 - ribosomal RNA small subunit methyltransferase G, at 3,681,281 to 3,681,895
_c35090
PGA1_c35100: PGA1_c35100 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG, at 3,681,896 to 3,683,770
_c35100
Position (kb)
3681
3682 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3680.474 kb on - strand at 3680.483 kb on - strand at 3680.499 kb on - strand at 3680.549 kb on - strand at 3680.549 kb on - strand at 3680.549 kb on - strand at 3680.563 kb on + strand, within PGA1_c35080 at 3680.662 kb on - strand, within PGA1_c35080 at 3680.752 kb on - strand, within PGA1_c35080 at 3680.943 kb on + strand, within PGA1_c35080 at 3680.943 kb on + strand, within PGA1_c35080 at 3681.087 kb on - strand, within PGA1_c35080 at 3681.102 kb on - strand, within PGA1_c35080 at 3681.287 kb on - strand at 3681.326 kb on - strand at 3681.418 kb on + strand, within PGA1_c35090 at 3681.432 kb on + strand, within PGA1_c35090 at 3681.432 kb on + strand, within PGA1_c35090 at 3681.440 kb on - strand, within PGA1_c35090 at 3681.448 kb on + strand, within PGA1_c35090 at 3681.451 kb on - strand, within PGA1_c35090 at 3681.461 kb on - strand, within PGA1_c35090 at 3681.483 kb on - strand, within PGA1_c35090 at 3681.497 kb on - strand, within PGA1_c35090 at 3681.512 kb on + strand, within PGA1_c35090 at 3681.520 kb on - strand, within PGA1_c35090 at 3681.583 kb on + strand, within PGA1_c35090 at 3681.584 kb on - strand, within PGA1_c35090 at 3681.591 kb on + strand, within PGA1_c35090 at 3681.591 kb on - strand, within PGA1_c35090 at 3681.593 kb on + strand, within PGA1_c35090 at 3681.633 kb on + strand, within PGA1_c35090 at 3681.633 kb on + strand, within PGA1_c35090 at 3681.689 kb on + strand, within PGA1_c35090 at 3681.689 kb on + strand, within PGA1_c35090 at 3681.739 kb on - strand, within PGA1_c35090 at 3681.739 kb on - strand, within PGA1_c35090 at 3681.743 kb on + strand, within PGA1_c35090 at 3681.748 kb on + strand, within PGA1_c35090 at 3681.756 kb on - strand, within PGA1_c35090 at 3681.766 kb on - strand, within PGA1_c35090 at 3681.825 kb on + strand, within PGA1_c35090 at 3681.825 kb on + strand, within PGA1_c35090 at 3681.825 kb on + strand, within PGA1_c35090 at 3681.825 kb on + strand, within PGA1_c35090 at 3681.825 kb on + strand, within PGA1_c35090 at 3681.835 kb on + strand at 3681.842 kb on - strand at 3681.843 kb on - strand at 3681.878 kb on + strand at 3681.881 kb on - strand at 3681.887 kb on - strand at 3681.893 kb on + strand at 3681.901 kb on - strand at 3681.901 kb on - strand at 3681.901 kb on - strand at 3681.901 kb on - strand at 3681.901 kb on - strand at 3681.901 kb on - strand at 3681.901 kb on - strand at 3681.907 kb on + strand at 3681.909 kb on + strand at 3681.915 kb on - strand at 3681.915 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 3,680,474 - -2.0 3,680,483 - +1.4 3,680,499 - +0.8 3,680,549 - -0.8 3,680,549 - -2.0 3,680,549 - -0.8 3,680,563 + PGA1_c35080 0.10 -2.2 3,680,662 - PGA1_c35080 0.23 -1.6 3,680,752 - PGA1_c35080 0.34 -1.8 3,680,943 + PGA1_c35080 0.58 -0.8 3,680,943 + PGA1_c35080 0.58 -1.6 3,681,087 - PGA1_c35080 0.76 +1.8 3,681,102 - PGA1_c35080 0.78 -1.2 3,681,287 - -1.8 3,681,326 - -0.6 3,681,418 + PGA1_c35090 0.22 -0.4 3,681,432 + PGA1_c35090 0.25 -2.3 3,681,432 + PGA1_c35090 0.25 +0.2 3,681,440 - PGA1_c35090 0.26 -1.6 3,681,448 + PGA1_c35090 0.27 -1.6 3,681,451 - PGA1_c35090 0.28 -0.2 3,681,461 - PGA1_c35090 0.29 -1.0 3,681,483 - PGA1_c35090 0.33 -0.8 3,681,497 - PGA1_c35090 0.35 +0.7 3,681,512 + PGA1_c35090 0.38 +0.3 3,681,520 - PGA1_c35090 0.39 -0.9 3,681,583 + PGA1_c35090 0.49 -0.2 3,681,584 - PGA1_c35090 0.49 -2.7 3,681,591 + PGA1_c35090 0.50 -3.0 3,681,591 - PGA1_c35090 0.50 -1.5 3,681,593 + PGA1_c35090 0.51 -0.6 3,681,633 + PGA1_c35090 0.57 -0.5 3,681,633 + PGA1_c35090 0.57 -2.3 3,681,689 + PGA1_c35090 0.66 +0.5 3,681,689 + PGA1_c35090 0.66 -1.8 3,681,739 - PGA1_c35090 0.74 +0.3 3,681,739 - PGA1_c35090 0.74 +0.4 3,681,743 + PGA1_c35090 0.75 +0.7 3,681,748 + PGA1_c35090 0.76 -0.2 3,681,756 - PGA1_c35090 0.77 -1.8 3,681,766 - PGA1_c35090 0.79 +0.4 3,681,825 + PGA1_c35090 0.88 +0.4 3,681,825 + PGA1_c35090 0.88 -0.9 3,681,825 + PGA1_c35090 0.88 -0.1 3,681,825 + PGA1_c35090 0.88 -2.0 3,681,825 + PGA1_c35090 0.88 -2.2 3,681,835 + +0.4 3,681,842 - +2.4 3,681,843 - -0.7 3,681,878 + +0.4 3,681,881 - -0.6 3,681,887 - +0.8 3,681,893 + +1.3 3,681,901 - +0.3 3,681,901 - -0.0 3,681,901 - -1.0 3,681,901 - -1.2 3,681,901 - +0.3 3,681,901 - -0.8 3,681,901 - -0.4 3,681,907 + -2.4 3,681,909 + -1.2 3,681,915 - +0.5 3,681,915 - +1.4
Or see this region's nucleotide sequence