Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03420 and PGA1_c03430 overlap by 8 nucleotides PGA1_c03430 and PGA1_c03440 are separated by 119 nucleotides PGA1_c03440 and PGA1_c03450 are separated by 22 nucleotides
PGA1_c03420: PGA1_c03420 - putative C-5 sterol desaturase, at 328,918 to 329,847
_c03420
PGA1_c03430: PGA1_c03430 - hypothetical protein, at 329,840 to 330,280
_c03430
PGA1_c03440: PGA1_c03440 - disulfide interchange protein tlpA-like protein, at 330,400 to 330,987
_c03440
PGA1_c03450: PGA1_c03450 - argininosuccinate lyase ArgH, at 331,010 to 332,380
_c03450
Position (kb) 330
331 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 329.404 kb on + strand, within PGA1_c03420 at 329.412 kb on - strand, within PGA1_c03420 at 329.412 kb on - strand, within PGA1_c03420 at 329.441 kb on - strand, within PGA1_c03420 at 329.447 kb on + strand, within PGA1_c03420 at 329.514 kb on + strand, within PGA1_c03420 at 329.520 kb on - strand, within PGA1_c03420 at 329.522 kb on + strand, within PGA1_c03420 at 329.547 kb on + strand, within PGA1_c03420 at 329.552 kb on + strand, within PGA1_c03420 at 329.558 kb on - strand, within PGA1_c03420 at 329.558 kb on - strand, within PGA1_c03420 at 329.606 kb on + strand, within PGA1_c03420 at 329.629 kb on - strand, within PGA1_c03420 at 329.682 kb on + strand, within PGA1_c03420 at 329.714 kb on - strand, within PGA1_c03420 at 329.721 kb on - strand, within PGA1_c03420 at 329.833 kb on - strand at 329.857 kb on - strand at 329.871 kb on - strand at 329.871 kb on - strand at 329.871 kb on - strand at 329.882 kb on - strand at 329.884 kb on + strand, within PGA1_c03430 at 329.892 kb on - strand, within PGA1_c03430 at 329.921 kb on + strand, within PGA1_c03430 at 329.994 kb on + strand, within PGA1_c03430 at 329.994 kb on + strand, within PGA1_c03430 at 330.007 kb on + strand, within PGA1_c03430 at 330.020 kb on - strand, within PGA1_c03430 at 330.022 kb on + strand, within PGA1_c03430 at 330.030 kb on - strand, within PGA1_c03430 at 330.057 kb on + strand, within PGA1_c03430 at 330.065 kb on - strand, within PGA1_c03430 at 330.065 kb on - strand, within PGA1_c03430 at 330.067 kb on + strand, within PGA1_c03430 at 330.082 kb on - strand, within PGA1_c03430 at 330.094 kb on + strand, within PGA1_c03430 at 330.097 kb on - strand, within PGA1_c03430 at 330.103 kb on + strand, within PGA1_c03430 at 330.155 kb on + strand, within PGA1_c03430 at 330.171 kb on - strand, within PGA1_c03430 at 330.172 kb on - strand, within PGA1_c03430 at 330.196 kb on + strand, within PGA1_c03430 at 330.198 kb on - strand, within PGA1_c03430 at 330.250 kb on + strand at 330.287 kb on + strand at 330.332 kb on - strand at 330.333 kb on - strand at 330.367 kb on + strand at 330.375 kb on - strand at 330.385 kb on + strand at 330.393 kb on - strand at 330.402 kb on + strand at 330.402 kb on + strand at 330.405 kb on - strand at 330.801 kb on + strand, within PGA1_c03440 at 330.969 kb on - strand at 330.982 kb on + strand at 331.918 kb on + strand, within PGA1_c03450
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 329,404 + PGA1_c03420 0.52 -1.8 329,412 - PGA1_c03420 0.53 +0.5 329,412 - PGA1_c03420 0.53 -1.4 329,441 - PGA1_c03420 0.56 +0.0 329,447 + PGA1_c03420 0.57 +0.4 329,514 + PGA1_c03420 0.64 -0.6 329,520 - PGA1_c03420 0.65 +2.6 329,522 + PGA1_c03420 0.65 +0.0 329,547 + PGA1_c03420 0.68 -0.3 329,552 + PGA1_c03420 0.68 +0.0 329,558 - PGA1_c03420 0.69 -1.0 329,558 - PGA1_c03420 0.69 +1.1 329,606 + PGA1_c03420 0.74 +1.7 329,629 - PGA1_c03420 0.76 +1.2 329,682 + PGA1_c03420 0.82 +1.1 329,714 - PGA1_c03420 0.86 -0.7 329,721 - PGA1_c03420 0.86 +1.1 329,833 - +1.9 329,857 - +1.2 329,871 - +0.3 329,871 - -0.9 329,871 - +2.8 329,882 - -0.7 329,884 + PGA1_c03430 0.10 -0.5 329,892 - PGA1_c03430 0.12 +1.4 329,921 + PGA1_c03430 0.18 +0.5 329,994 + PGA1_c03430 0.35 +0.3 329,994 + PGA1_c03430 0.35 +1.3 330,007 + PGA1_c03430 0.38 -0.6 330,020 - PGA1_c03430 0.41 -0.3 330,022 + PGA1_c03430 0.41 +1.3 330,030 - PGA1_c03430 0.43 -1.2 330,057 + PGA1_c03430 0.49 -0.9 330,065 - PGA1_c03430 0.51 -0.2 330,065 - PGA1_c03430 0.51 +0.2 330,067 + PGA1_c03430 0.51 +1.4 330,082 - PGA1_c03430 0.55 +1.2 330,094 + PGA1_c03430 0.58 +1.1 330,097 - PGA1_c03430 0.58 -1.0 330,103 + PGA1_c03430 0.60 +0.5 330,155 + PGA1_c03430 0.71 +0.9 330,171 - PGA1_c03430 0.75 -0.9 330,172 - PGA1_c03430 0.75 +2.1 330,196 + PGA1_c03430 0.81 -3.4 330,198 - PGA1_c03430 0.81 +0.4 330,250 + +0.5 330,287 + +1.4 330,332 - +1.1 330,333 - +0.0 330,367 + -0.3 330,375 - +0.9 330,385 + -0.9 330,393 - -0.3 330,402 + -0.3 330,402 + -0.3 330,405 - -0.3 330,801 + PGA1_c03440 0.68 -0.9 330,969 - +0.1 330,982 + +0.3 331,918 + PGA1_c03450 0.66 -1.3
Or see this region's nucleotide sequence