Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c33480 and PGA1_c33490 overlap by 14 nucleotides PGA1_c33490 and PGA1_c33500 are separated by 30 nucleotides PGA1_c33500 and PGA1_c33510 overlap by 14 nucleotides
PGA1_c33480: PGA1_c33480 - protein PmbA, at 3,508,594 to 3,509,940
_c33480
PGA1_c33490: PGA1_c33490 - inositol-1-monophosphatase SuhB, at 3,509,927 to 3,510,730
_c33490
PGA1_c33500: PGA1_c33500 - 3-deoxy-D-manno-octulosonic-acid transferase-like protein, at 3,510,761 to 3,511,957
_c33500
PGA1_c33510: PGA1_c33510 - tetraacyldisaccharide 4'-kinase LpxK, at 3,511,944 to 3,512,948
_c33510
Position (kb)
3510
3511
3512 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3509.910 kb on + strand at 3509.989 kb on + strand at 3510.627 kb on + strand, within PGA1_c33490 at 3510.630 kb on - strand, within PGA1_c33490 at 3510.708 kb on + strand at 3510.729 kb on + strand at 3510.747 kb on + strand at 3510.763 kb on + strand at 3511.431 kb on - strand, within PGA1_c33500 at 3511.518 kb on - strand, within PGA1_c33500 at 3511.518 kb on - strand, within PGA1_c33500 at 3511.520 kb on + strand, within PGA1_c33500 at 3511.535 kb on + strand, within PGA1_c33500 at 3511.545 kb on + strand, within PGA1_c33500 at 3511.574 kb on + strand, within PGA1_c33500 at 3511.584 kb on + strand, within PGA1_c33500 at 3511.584 kb on + strand, within PGA1_c33500 at 3511.602 kb on - strand, within PGA1_c33500 at 3511.665 kb on + strand, within PGA1_c33500 at 3511.695 kb on + strand, within PGA1_c33500 at 3511.703 kb on + strand, within PGA1_c33500 at 3511.703 kb on + strand, within PGA1_c33500 at 3511.713 kb on + strand, within PGA1_c33500 at 3511.831 kb on - strand, within PGA1_c33500 at 3511.943 kb on + strand at 3511.943 kb on + strand at 3512.945 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 3,509,910 + -0.9 3,509,989 + -0.5 3,510,627 + PGA1_c33490 0.87 -2.3 3,510,630 - PGA1_c33490 0.87 -0.3 3,510,708 + -1.7 3,510,729 + +0.2 3,510,747 + +0.1 3,510,763 + +0.3 3,511,431 - PGA1_c33500 0.56 -2.1 3,511,518 - PGA1_c33500 0.63 -2.2 3,511,518 - PGA1_c33500 0.63 +0.1 3,511,520 + PGA1_c33500 0.63 -0.6 3,511,535 + PGA1_c33500 0.65 -0.9 3,511,545 + PGA1_c33500 0.65 -0.3 3,511,574 + PGA1_c33500 0.68 -2.5 3,511,584 + PGA1_c33500 0.69 -1.0 3,511,584 + PGA1_c33500 0.69 -2.8 3,511,602 - PGA1_c33500 0.70 +0.7 3,511,665 + PGA1_c33500 0.76 -2.4 3,511,695 + PGA1_c33500 0.78 -0.8 3,511,703 + PGA1_c33500 0.79 -1.1 3,511,703 + PGA1_c33500 0.79 -2.4 3,511,713 + PGA1_c33500 0.80 +0.7 3,511,831 - PGA1_c33500 0.89 -1.3 3,511,943 + -1.1 3,511,943 + -0.3 3,512,945 - -2.4
Or see this region's nucleotide sequence