Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02390

Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02380 and PGA1_c02390 are separated by 89 nucleotidesPGA1_c02390 and PGA1_c02400 are separated by 79 nucleotides PGA1_c02380: PGA1_c02380 - hypothetical protein, at 215,183 to 216,454 _c02380 PGA1_c02390: PGA1_c02390 - transcriptional regulator, MerR family, at 216,544 to 216,948 _c02390 PGA1_c02400: PGA1_c02400 - putative major facilitator superfamily transporter, at 217,028 to 218,269 _c02400 Position (kb) 216 217Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 215.611 kb on - strand, within PGA1_c02380at 215.681 kb on - strand, within PGA1_c02380at 215.703 kb on + strand, within PGA1_c02380at 215.703 kb on + strand, within PGA1_c02380at 215.711 kb on - strand, within PGA1_c02380at 215.752 kb on - strand, within PGA1_c02380at 215.762 kb on - strand, within PGA1_c02380at 215.811 kb on + strand, within PGA1_c02380at 215.811 kb on + strand, within PGA1_c02380at 215.811 kb on + strand, within PGA1_c02380at 215.813 kb on - strand, within PGA1_c02380at 215.906 kb on - strand, within PGA1_c02380at 215.919 kb on + strand, within PGA1_c02380at 215.947 kb on + strand, within PGA1_c02380at 215.963 kb on + strand, within PGA1_c02380at 215.990 kb on + strand, within PGA1_c02380at 215.991 kb on + strand, within PGA1_c02380at 215.998 kb on - strand, within PGA1_c02380at 215.999 kb on - strand, within PGA1_c02380at 216.002 kb on + strand, within PGA1_c02380at 216.014 kb on + strand, within PGA1_c02380at 216.014 kb on + strand, within PGA1_c02380at 216.022 kb on - strand, within PGA1_c02380at 216.022 kb on - strand, within PGA1_c02380at 216.057 kb on + strand, within PGA1_c02380at 216.075 kb on - strand, within PGA1_c02380at 216.075 kb on - strand, within PGA1_c02380at 216.090 kb on - strand, within PGA1_c02380at 216.104 kb on + strand, within PGA1_c02380at 216.152 kb on + strand, within PGA1_c02380at 216.171 kb on + strand, within PGA1_c02380at 216.171 kb on + strand, within PGA1_c02380at 216.211 kb on + strand, within PGA1_c02380at 216.316 kb on - strand, within PGA1_c02380at 216.327 kb on - strandat 216.385 kb on + strandat 216.400 kb on + strandat 216.420 kb on + strandat 216.425 kb on - strandat 216.450 kb on + strandat 216.450 kb on + strandat 216.450 kb on + strandat 216.450 kb on + strandat 216.450 kb on + strandat 216.450 kb on + strandat 216.450 kb on + strandat 216.458 kb on - strandat 216.458 kb on - strandat 216.458 kb on - strandat 216.458 kb on - strandat 216.494 kb on + strandat 216.573 kb on - strandat 216.601 kb on + strand, within PGA1_c02390at 216.610 kb on + strand, within PGA1_c02390at 216.623 kb on - strand, within PGA1_c02390at 216.623 kb on - strand, within PGA1_c02390at 216.646 kb on + strand, within PGA1_c02390at 216.665 kb on - strand, within PGA1_c02390at 216.708 kb on - strand, within PGA1_c02390at 216.779 kb on + strand, within PGA1_c02390at 216.858 kb on - strand, within PGA1_c02390at 216.879 kb on + strand, within PGA1_c02390at 216.887 kb on - strand, within PGA1_c02390at 216.924 kb on - strandat 216.926 kb on + strandat 216.934 kb on - strandat 216.990 kb on + strandat 216.990 kb on + strandat 216.990 kb on + strandat 216.990 kb on + strandat 216.990 kb on + strandat 216.990 kb on + strandat 216.990 kb on + strandat 216.990 kb on + strandat 216.992 kb on + strandat 216.998 kb on - strandat 216.998 kb on - strandat 216.998 kb on - strandat 217.000 kb on - strandat 217.000 kb on - strandat 217.039 kb on + strandat 217.039 kb on + strandat 217.039 kb on + strandat 217.047 kb on - strandat 217.047 kb on - strandat 217.047 kb on - strandat 217.234 kb on - strand, within PGA1_c02400at 217.243 kb on + strand, within PGA1_c02400at 217.306 kb on - strand, within PGA1_c02400at 217.336 kb on - strand, within PGA1_c02400at 217.404 kb on - strand, within PGA1_c02400at 217.450 kb on + strand, within PGA1_c02400at 217.450 kb on + strand, within PGA1_c02400at 217.455 kb on + strand, within PGA1_c02400at 217.455 kb on + strand, within PGA1_c02400at 217.458 kb on - strand, within PGA1_c02400at 217.463 kb on - strand, within PGA1_c02400at 217.463 kb on - strand, within PGA1_c02400at 217.463 kb on - strand, within PGA1_c02400at 217.509 kb on + strand, within PGA1_c02400at 217.656 kb on + strand, within PGA1_c02400at 217.708 kb on + strand, within PGA1_c02400at 217.723 kb on + strand, within PGA1_c02400at 217.775 kb on - strand, within PGA1_c02400at 217.797 kb on + strand, within PGA1_c02400at 217.797 kb on + strand, within PGA1_c02400at 217.805 kb on - strand, within PGA1_c02400at 217.805 kb on - strand, within PGA1_c02400at 217.805 kb on - strand, within PGA1_c02400at 217.822 kb on + strand, within PGA1_c02400at 217.864 kb on + strand, within PGA1_c02400

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml
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215,611 - PGA1_c02380 0.34 -1.1
215,681 - PGA1_c02380 0.39 +1.1
215,703 + PGA1_c02380 0.41 +0.6
215,703 + PGA1_c02380 0.41 +1.1
215,711 - PGA1_c02380 0.42 -0.9
215,752 - PGA1_c02380 0.45 -0.1
215,762 - PGA1_c02380 0.46 -0.9
215,811 + PGA1_c02380 0.49 -0.6
215,811 + PGA1_c02380 0.49 -0.0
215,811 + PGA1_c02380 0.49 -1.6
215,813 - PGA1_c02380 0.50 -0.6
215,906 - PGA1_c02380 0.57 -1.3
215,919 + PGA1_c02380 0.58 +0.4
215,947 + PGA1_c02380 0.60 -0.4
215,963 + PGA1_c02380 0.61 -2.1
215,990 + PGA1_c02380 0.63 -0.3
215,991 + PGA1_c02380 0.64 +0.3
215,998 - PGA1_c02380 0.64 +0.3
215,999 - PGA1_c02380 0.64 +0.1
216,002 + PGA1_c02380 0.64 -0.0
216,014 + PGA1_c02380 0.65 +1.0
216,014 + PGA1_c02380 0.65 +2.0
216,022 - PGA1_c02380 0.66 -0.2
216,022 - PGA1_c02380 0.66 +0.5
216,057 + PGA1_c02380 0.69 -1.7
216,075 - PGA1_c02380 0.70 -0.4
216,075 - PGA1_c02380 0.70 -0.6
216,090 - PGA1_c02380 0.71 -0.4
216,104 + PGA1_c02380 0.72 -2.2
216,152 + PGA1_c02380 0.76 +0.3
216,171 + PGA1_c02380 0.78 +1.0
216,171 + PGA1_c02380 0.78 +0.7
216,211 + PGA1_c02380 0.81 -0.2
216,316 - PGA1_c02380 0.89 +0.7
216,327 - +0.3
216,385 + -0.3
216,400 + -0.0
216,420 + -1.2
216,425 - +0.4
216,450 + -0.3
216,450 + +1.2
216,450 + -0.6
216,450 + +0.3
216,450 + -0.3
216,450 + -0.3
216,450 + -0.1
216,458 - +1.1
216,458 - -0.0
216,458 - -0.3
216,458 - +0.7
216,494 + -0.0
216,573 - -2.0
216,601 + PGA1_c02390 0.14 -0.7
216,610 + PGA1_c02390 0.16 -3.3
216,623 - PGA1_c02390 0.20 +3.0
216,623 - PGA1_c02390 0.20 +1.7
216,646 + PGA1_c02390 0.25 -0.1
216,665 - PGA1_c02390 0.30 -0.6
216,708 - PGA1_c02390 0.40 +0.9
216,779 + PGA1_c02390 0.58 +2.0
216,858 - PGA1_c02390 0.78 +0.1
216,879 + PGA1_c02390 0.83 -1.4
216,887 - PGA1_c02390 0.85 +1.5
216,924 - +0.5
216,926 + +1.9
216,934 - +0.4
216,990 + -0.2
216,990 + +0.9
216,990 + -0.9
216,990 + +1.8
216,990 + +0.2
216,990 + -0.5
216,990 + -0.0
216,990 + +0.5
216,992 + +1.0
216,998 - +1.1
216,998 - -0.5
216,998 - -0.7
217,000 - +1.7
217,000 - +0.1
217,039 + -1.6
217,039 + +1.5
217,039 + +0.6
217,047 - -2.3
217,047 - -0.5
217,047 - -2.4
217,234 - PGA1_c02400 0.17 +0.2
217,243 + PGA1_c02400 0.17 +0.9
217,306 - PGA1_c02400 0.22 -0.3
217,336 - PGA1_c02400 0.25 +0.8
217,404 - PGA1_c02400 0.30 +0.4
217,450 + PGA1_c02400 0.34 +1.2
217,450 + PGA1_c02400 0.34 +1.7
217,455 + PGA1_c02400 0.34 +0.1
217,455 + PGA1_c02400 0.34 -0.1
217,458 - PGA1_c02400 0.35 +0.1
217,463 - PGA1_c02400 0.35 +1.3
217,463 - PGA1_c02400 0.35 +0.1
217,463 - PGA1_c02400 0.35 +0.4
217,509 + PGA1_c02400 0.39 +0.5
217,656 + PGA1_c02400 0.51 +0.9
217,708 + PGA1_c02400 0.55 -0.1
217,723 + PGA1_c02400 0.56 +1.2
217,775 - PGA1_c02400 0.60 +0.5
217,797 + PGA1_c02400 0.62 -0.3
217,797 + PGA1_c02400 0.62 -1.4
217,805 - PGA1_c02400 0.63 -2.1
217,805 - PGA1_c02400 0.63 +0.9
217,805 - PGA1_c02400 0.63 +0.0
217,822 + PGA1_c02400 0.64 -0.4
217,864 + PGA1_c02400 0.67 -1.3

Or see this region's nucleotide sequence