Strain Fitness in Dechlorosoma suillum PS around Dsui_3474

Experiment: ALP with perchlorate 12 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3471 and Dsui_3472 are separated by 10 nucleotidesDsui_3472 and Dsui_3473 are separated by 10 nucleotidesDsui_3473 and Dsui_3474 overlap by 4 nucleotidesDsui_3474 and Dsui_3475 are separated by 58 nucleotides Dsui_3471: Dsui_3471 - methyl-accepting chemotaxis protein, at 3,734,006 to 3,735,151 _3471 Dsui_3472: Dsui_3472 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,735,162 to 3,735,530 _3472 Dsui_3473: Dsui_3473 - putative NTP binding protein (contains STAS domain), at 3,735,541 to 3,735,855 _3473 Dsui_3474: Dsui_3474 - chemotaxis protein histidine kinase-like protein, at 3,735,852 to 3,738,071 _3474 Dsui_3475: Dsui_3475 - methyl-accepting chemotaxis protein, at 3,738,130 to 3,740,301 _3475 Position (kb) 3735 3736 3737 3738 3739Strain fitness (log2 ratio) -2 -1 0 1at 3735.265 kb on + strandat 3735.274 kb on + strandat 3735.341 kb on - strandat 3735.497 kb on - strandat 3735.532 kb on - strandat 3735.532 kb on - strandat 3735.546 kb on + strandat 3735.578 kb on + strand, within Dsui_3473at 3735.676 kb on - strand, within Dsui_3473at 3735.774 kb on - strandat 3735.836 kb on + strandat 3735.900 kb on - strandat 3736.447 kb on + strand, within Dsui_3474at 3736.529 kb on - strand, within Dsui_3474at 3736.591 kb on + strand, within Dsui_3474at 3736.607 kb on + strand, within Dsui_3474at 3736.636 kb on - strand, within Dsui_3474at 3736.906 kb on - strand, within Dsui_3474at 3736.941 kb on + strand, within Dsui_3474at 3736.944 kb on - strand, within Dsui_3474at 3737.005 kb on + strandat 3737.106 kb on - strand, within Dsui_3474at 3737.108 kb on + strandat 3737.153 kb on + strand, within Dsui_3474at 3737.260 kb on - strandat 3737.270 kb on - strandat 3737.394 kb on + strandat 3737.402 kb on - strandat 3737.491 kb on + strand, within Dsui_3474at 3737.491 kb on + strand, within Dsui_3474at 3737.547 kb on + strandat 3737.638 kb on + strand, within Dsui_3474at 3737.725 kb on + strand, within Dsui_3474at 3737.733 kb on - strand, within Dsui_3474at 3737.755 kb on + strandat 3737.873 kb on + strandat 3738.370 kb on + strand, within Dsui_3475at 3738.538 kb on + strand, within Dsui_3475at 3738.539 kb on - strand, within Dsui_3475at 3738.617 kb on - strand, within Dsui_3475at 3738.715 kb on - strand, within Dsui_3475at 3738.877 kb on - strand, within Dsui_3475at 3739.062 kb on - strand, within Dsui_3475

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM
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3,735,265 + -0.6
3,735,274 + +0.4
3,735,341 - +0.4
3,735,497 - +0.4
3,735,532 - +0.4
3,735,532 - -0.6
3,735,546 + -1.2
3,735,578 + Dsui_3473 0.12 +0.4
3,735,676 - Dsui_3473 0.43 -1.2
3,735,774 - +0.4
3,735,836 + +0.4
3,735,900 - -1.2
3,736,447 + Dsui_3474 0.27 -2.4
3,736,529 - Dsui_3474 0.30 -1.6
3,736,591 + Dsui_3474 0.33 -1.9
3,736,607 + Dsui_3474 0.34 +0.4
3,736,636 - Dsui_3474 0.35 -0.6
3,736,906 - Dsui_3474 0.47 -0.6
3,736,941 + Dsui_3474 0.49 -1.6
3,736,944 - Dsui_3474 0.49 -1.6
3,737,005 + +0.4
3,737,106 - Dsui_3474 0.56 +0.4
3,737,108 + +0.4
3,737,153 + Dsui_3474 0.59 -2.6
3,737,260 - -0.6
3,737,270 - +0.4
3,737,394 + +0.4
3,737,402 - +0.4
3,737,491 + Dsui_3474 0.74 -0.6
3,737,491 + Dsui_3474 0.74 -0.6
3,737,547 + +0.4
3,737,638 + Dsui_3474 0.80 +0.4
3,737,725 + Dsui_3474 0.84 -0.6
3,737,733 - Dsui_3474 0.85 +0.4
3,737,755 + +0.4
3,737,873 + +0.4
3,738,370 + Dsui_3475 0.11 -0.6
3,738,538 + Dsui_3475 0.19 +0.4
3,738,539 - Dsui_3475 0.19 -1.2
3,738,617 - Dsui_3475 0.22 +0.4
3,738,715 - Dsui_3475 0.27 +0.4
3,738,877 - Dsui_3475 0.34 +0.4
3,739,062 - Dsui_3475 0.43 -0.6

Or see this region's nucleotide sequence