Experiment: ALP with perchlorate 12 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3471 and Dsui_3472 are separated by 10 nucleotides Dsui_3472 and Dsui_3473 are separated by 10 nucleotides Dsui_3473 and Dsui_3474 overlap by 4 nucleotides Dsui_3474 and Dsui_3475 are separated by 58 nucleotides
Dsui_3471: Dsui_3471 - methyl-accepting chemotaxis protein, at 3,734,006 to 3,735,151
_3471
Dsui_3472: Dsui_3472 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,735,162 to 3,735,530
_3472
Dsui_3473: Dsui_3473 - putative NTP binding protein (contains STAS domain), at 3,735,541 to 3,735,855
_3473
Dsui_3474: Dsui_3474 - chemotaxis protein histidine kinase-like protein, at 3,735,852 to 3,738,071
_3474
Dsui_3475: Dsui_3475 - methyl-accepting chemotaxis protein, at 3,738,130 to 3,740,301
_3475
Position (kb)
3735
3736
3737
3738
3739 Strain fitness (log2 ratio)
-2
-1
0
1 at 3735.265 kb on + strand at 3735.274 kb on + strand at 3735.341 kb on - strand at 3735.497 kb on - strand at 3735.532 kb on - strand at 3735.532 kb on - strand at 3735.546 kb on + strand at 3735.578 kb on + strand, within Dsui_3473 at 3735.676 kb on - strand, within Dsui_3473 at 3735.774 kb on - strand at 3735.836 kb on + strand at 3735.900 kb on - strand at 3736.447 kb on + strand, within Dsui_3474 at 3736.529 kb on - strand, within Dsui_3474 at 3736.591 kb on + strand, within Dsui_3474 at 3736.607 kb on + strand, within Dsui_3474 at 3736.636 kb on - strand, within Dsui_3474 at 3736.906 kb on - strand, within Dsui_3474 at 3736.941 kb on + strand, within Dsui_3474 at 3736.944 kb on - strand, within Dsui_3474 at 3737.005 kb on + strand at 3737.106 kb on - strand, within Dsui_3474 at 3737.108 kb on + strand at 3737.153 kb on + strand, within Dsui_3474 at 3737.260 kb on - strand at 3737.270 kb on - strand at 3737.394 kb on + strand at 3737.402 kb on - strand at 3737.491 kb on + strand, within Dsui_3474 at 3737.491 kb on + strand, within Dsui_3474 at 3737.547 kb on + strand at 3737.638 kb on + strand, within Dsui_3474 at 3737.725 kb on + strand, within Dsui_3474 at 3737.733 kb on - strand, within Dsui_3474 at 3737.755 kb on + strand at 3737.873 kb on + strand at 3738.370 kb on + strand, within Dsui_3475 at 3738.538 kb on + strand, within Dsui_3475 at 3738.539 kb on - strand, within Dsui_3475 at 3738.617 kb on - strand, within Dsui_3475 at 3738.715 kb on - strand, within Dsui_3475 at 3738.877 kb on - strand, within Dsui_3475 at 3739.062 kb on - strand, within Dsui_3475
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM remove 3,735,265 + -0.6 3,735,274 + +0.4 3,735,341 - +0.4 3,735,497 - +0.4 3,735,532 - +0.4 3,735,532 - -0.6 3,735,546 + -1.2 3,735,578 + Dsui_3473 0.12 +0.4 3,735,676 - Dsui_3473 0.43 -1.2 3,735,774 - +0.4 3,735,836 + +0.4 3,735,900 - -1.2 3,736,447 + Dsui_3474 0.27 -2.4 3,736,529 - Dsui_3474 0.30 -1.6 3,736,591 + Dsui_3474 0.33 -1.9 3,736,607 + Dsui_3474 0.34 +0.4 3,736,636 - Dsui_3474 0.35 -0.6 3,736,906 - Dsui_3474 0.47 -0.6 3,736,941 + Dsui_3474 0.49 -1.6 3,736,944 - Dsui_3474 0.49 -1.6 3,737,005 + +0.4 3,737,106 - Dsui_3474 0.56 +0.4 3,737,108 + +0.4 3,737,153 + Dsui_3474 0.59 -2.6 3,737,260 - -0.6 3,737,270 - +0.4 3,737,394 + +0.4 3,737,402 - +0.4 3,737,491 + Dsui_3474 0.74 -0.6 3,737,491 + Dsui_3474 0.74 -0.6 3,737,547 + +0.4 3,737,638 + Dsui_3474 0.80 +0.4 3,737,725 + Dsui_3474 0.84 -0.6 3,737,733 - Dsui_3474 0.85 +0.4 3,737,755 + +0.4 3,737,873 + +0.4 3,738,370 + Dsui_3475 0.11 -0.6 3,738,538 + Dsui_3475 0.19 +0.4 3,738,539 - Dsui_3475 0.19 -1.2 3,738,617 - Dsui_3475 0.22 +0.4 3,738,715 - Dsui_3475 0.27 +0.4 3,738,877 - Dsui_3475 0.34 +0.4 3,739,062 - Dsui_3475 0.43 -0.6
Or see this region's nucleotide sequence