Strain Fitness in Dechlorosoma suillum PS around Dsui_3451

Experiment: ALP with perchlorate 12 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3450 and Dsui_3451 are separated by 73 nucleotidesDsui_3451 and Dsui_3452 are separated by 172 nucleotidesDsui_3452 and Dsui_3453 are separated by 9 nucleotides Dsui_3450: Dsui_3450 - acetyl-CoA hydrolase, at 3,710,607 to 3,711,902 _3450 Dsui_3451: Dsui_3451 - sugar phosphate permease, at 3,711,976 to 3,713,259 _3451 Dsui_3452: Dsui_3452 - cytidyltransferase-related enzyme, at 3,713,432 to 3,713,923 _3452 Dsui_3453: Dsui_3453 - cation diffusion facilitator family transporter, at 3,713,933 to 3,714,841 _3453 Position (kb) 3711 3712 3713 3714Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3711.028 kb on + strand, within Dsui_3450at 3711.056 kb on - strand, within Dsui_3450at 3711.111 kb on - strand, within Dsui_3450at 3711.115 kb on + strand, within Dsui_3450at 3711.163 kb on - strand, within Dsui_3450at 3711.232 kb on + strand, within Dsui_3450at 3711.345 kb on - strand, within Dsui_3450at 3711.347 kb on + strand, within Dsui_3450at 3711.353 kb on + strand, within Dsui_3450at 3711.417 kb on - strand, within Dsui_3450at 3711.434 kb on + strand, within Dsui_3450at 3711.434 kb on + strand, within Dsui_3450at 3711.442 kb on - strand, within Dsui_3450at 3711.726 kb on - strand, within Dsui_3450at 3711.726 kb on - strand, within Dsui_3450at 3711.784 kb on + strandat 3711.789 kb on + strandat 3711.843 kb on + strandat 3711.904 kb on - strandat 3711.981 kb on + strandat 3712.319 kb on - strand, within Dsui_3451at 3712.335 kb on + strand, within Dsui_3451at 3712.395 kb on + strand, within Dsui_3451at 3712.452 kb on + strand, within Dsui_3451at 3712.487 kb on - strand, within Dsui_3451at 3712.494 kb on + strand, within Dsui_3451at 3712.519 kb on + strand, within Dsui_3451at 3712.608 kb on - strand, within Dsui_3451at 3712.655 kb on + strand, within Dsui_3451at 3712.655 kb on + strand, within Dsui_3451at 3712.716 kb on - strand, within Dsui_3451at 3712.930 kb on + strand, within Dsui_3451at 3712.941 kb on + strandat 3713.027 kb on - strand, within Dsui_3451at 3713.027 kb on - strand, within Dsui_3451at 3713.070 kb on - strand, within Dsui_3451at 3713.122 kb on + strandat 3713.133 kb on + strandat 3713.135 kb on - strandat 3713.220 kb on - strandat 3713.273 kb on - strandat 3713.319 kb on - strandat 3713.347 kb on + strandat 3713.918 kb on + strandat 3713.926 kb on - strandat 3714.032 kb on - strand, within Dsui_3453at 3714.104 kb on - strand, within Dsui_3453at 3714.217 kb on + strand, within Dsui_3453

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM
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3,711,028 + Dsui_3450 0.32 -0.6
3,711,056 - Dsui_3450 0.35 -0.6
3,711,111 - Dsui_3450 0.39 -2.4
3,711,115 + Dsui_3450 0.39 -0.2
3,711,163 - Dsui_3450 0.43 +0.4
3,711,232 + Dsui_3450 0.48 -0.1
3,711,345 - Dsui_3450 0.57 +0.4
3,711,347 + Dsui_3450 0.57 -0.4
3,711,353 + Dsui_3450 0.58 -0.3
3,711,417 - Dsui_3450 0.62 -0.6
3,711,434 + Dsui_3450 0.64 -0.4
3,711,434 + Dsui_3450 0.64 -0.3
3,711,442 - Dsui_3450 0.64 +0.4
3,711,726 - Dsui_3450 0.86 +0.4
3,711,726 - Dsui_3450 0.86 +0.4
3,711,784 + -0.2
3,711,789 + -0.2
3,711,843 + -0.4
3,711,904 - +0.4
3,711,981 + -2.2
3,712,319 - Dsui_3451 0.27 -0.6
3,712,335 + Dsui_3451 0.28 +0.4
3,712,395 + Dsui_3451 0.33 +0.4
3,712,452 + Dsui_3451 0.37 -1.2
3,712,487 - Dsui_3451 0.40 +2.0
3,712,494 + Dsui_3451 0.40 +0.4
3,712,519 + Dsui_3451 0.42 +0.4
3,712,608 - Dsui_3451 0.49 -1.2
3,712,655 + Dsui_3451 0.53 -2.6
3,712,655 + Dsui_3451 0.53 +0.4
3,712,716 - Dsui_3451 0.58 -1.6
3,712,930 + Dsui_3451 0.74 -2.2
3,712,941 + +0.4
3,713,027 - Dsui_3451 0.82 -0.6
3,713,027 - Dsui_3451 0.82 -2.4
3,713,070 - Dsui_3451 0.85 -0.6
3,713,122 + -1.2
3,713,133 + -2.8
3,713,135 - -2.4
3,713,220 - -0.6
3,713,273 - -2.8
3,713,319 - -1.9
3,713,347 + -1.2
3,713,918 + +0.1
3,713,926 - -0.6
3,714,032 - Dsui_3453 0.11 -0.6
3,714,104 - Dsui_3453 0.19 -1.9
3,714,217 + Dsui_3453 0.31 -0.1

Or see this region's nucleotide sequence