Experiment: ALP with perchlorate 12 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3227 and Dsui_3228 are separated by 163 nucleotides Dsui_3228 and Dsui_3229 are separated by 72 nucleotides
Dsui_3227: Dsui_3227 - 2-isopropylmalate synthase, at 3,465,263 to 3,466,945
_3227
Dsui_3228: Dsui_3228 - transcriptional regulator, at 3,467,109 to 3,467,576
_3228
Dsui_3229: Dsui_3229 - transglutaminase-like enzyme, predicted cysteine protease, at 3,467,649 to 3,468,590
_3229
Position (kb)
3467
3468 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3466.199 kb on - strand, within Dsui_3227 at 3466.286 kb on - strand, within Dsui_3227 at 3466.327 kb on - strand, within Dsui_3227 at 3466.386 kb on - strand, within Dsui_3227 at 3466.405 kb on + strand, within Dsui_3227 at 3466.477 kb on + strand at 3466.546 kb on + strand at 3466.552 kb on - strand, within Dsui_3227 at 3466.553 kb on - strand, within Dsui_3227 at 3466.611 kb on - strand, within Dsui_3227 at 3466.681 kb on + strand at 3466.717 kb on - strand, within Dsui_3227 at 3466.722 kb on - strand, within Dsui_3227 at 3466.837 kb on - strand at 3466.871 kb on - strand at 3466.886 kb on - strand at 3466.941 kb on - strand at 3467.154 kb on - strand at 3467.287 kb on + strand, within Dsui_3228 at 3467.338 kb on + strand, within Dsui_3228 at 3467.356 kb on + strand, within Dsui_3228 at 3467.420 kb on - strand, within Dsui_3228 at 3467.539 kb on + strand at 3467.556 kb on + strand at 3467.563 kb on - strand at 3467.617 kb on - strand at 3467.660 kb on - strand at 3467.667 kb on + strand at 3467.714 kb on + strand at 3467.722 kb on - strand at 3467.722 kb on - strand at 3467.722 kb on - strand at 3467.763 kb on - strand, within Dsui_3229 at 3467.805 kb on + strand at 3467.812 kb on - strand, within Dsui_3229 at 3467.820 kb on + strand at 3467.828 kb on - strand, within Dsui_3229 at 3467.950 kb on + strand at 3468.133 kb on - strand, within Dsui_3229 at 3468.149 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 12 mM remove 3,466,199 - Dsui_3227 0.56 -0.1 3,466,286 - Dsui_3227 0.61 +0.9 3,466,327 - Dsui_3227 0.63 +0.3 3,466,386 - Dsui_3227 0.67 +0.1 3,466,405 + Dsui_3227 0.68 -1.7 3,466,477 + -1.2 3,466,546 + +0.3 3,466,552 - Dsui_3227 0.77 -1.2 3,466,553 - Dsui_3227 0.77 -0.7 3,466,611 - Dsui_3227 0.80 +0.7 3,466,681 + +0.3 3,466,717 - Dsui_3227 0.86 -0.7 3,466,722 - Dsui_3227 0.87 -0.8 3,466,837 - +0.9 3,466,871 - -2.2 3,466,886 - -1.7 3,466,941 - -0.3 3,467,154 - -2.5 3,467,287 + Dsui_3228 0.38 -0.2 3,467,338 + Dsui_3228 0.49 +0.2 3,467,356 + Dsui_3228 0.53 +0.0 3,467,420 - Dsui_3228 0.66 -2.0 3,467,539 + +0.3 3,467,556 + -0.1 3,467,563 - -1.2 3,467,617 - -0.7 3,467,660 - -1.3 3,467,667 + +0.3 3,467,714 + -1.2 3,467,722 - +0.3 3,467,722 - +0.3 3,467,722 - -3.0 3,467,763 - Dsui_3229 0.12 +0.7 3,467,805 + -1.2 3,467,812 - Dsui_3229 0.17 -2.2 3,467,820 + -1.2 3,467,828 - Dsui_3229 0.19 -1.8 3,467,950 + +0.3 3,468,133 - Dsui_3229 0.51 -1.0 3,468,149 + +0.3
Or see this region's nucleotide sequence